نتایج جستجو برای: amino acid substitution polymorphisms

تعداد نتایج: 919516  

2010
Wayne Delport Konrad Scheffler Mike B. Gravenor Spencer V. Muse Sergei Kosakovsky Pond

The single rate codon model of non-synonymous substitution is ubiquitous in phylogenetic modeling. Indeed, the use of a non-synonymous to synonymous substitution rate ratio parameter has facilitated the interpretation of selection pressure on genomes. Although the single rate model has achieved wide acceptance, we argue that the assumption of a single rate of non-synonymous substitution is biol...

Very little is known about LHR and FSHR genes of domestic dromedary camels. The main objective of this study was to determine and analyze partial genomic regions of FSHR and LHR genes in dromedary camels for the first time. To this end, a total of 50 DNA samples belonging to dromedary camels raised in Iran were sent for sequencing (25 samples of each gene). We compared the nucleotide sequences ...

Journal: :Drug metabolism and disposition: the biological fate of chemicals 2003
Virginie Lattard Jun Zhang Quyen Tran Bjarte Furnes Daniel Schlenk John R Cashman

To characterize the contribution of the human flavin-containing monooxygenase form 3 (FMO3) in the metabolism and disposition of drugs and xenobiotics, we determined the single nucleotide polymorphisms in the coding region and adjacent splice junctions of FMO3 in 134 African Americans and 120 Caucasians from the United States. In the regions examined, DNA resequencing or high throughput MassEXT...

Journal: :Applied and environmental microbiology 2007
Yukiko Maeda Akinori Kiba Kouhei Ohnishi Yasufumi Hikichi

Oxolinic acid (OA) resistance in field isolates of Burkholderia glumae, a causal agent of bacterial grain rot, is dependent on an amino acid substitution at position 83 in GyrA (GyrA83). In the present study, among spontaneous in vitro mutants from the OA-sensitive B. glumae strain Pg-10, we selected OA-resistant mutants that emerged at a rate of 5.7 x 10(-10). Nucleotide sequence analysis of t...

2016
Srikanth Mairpady Shambat Nikolai Siemens Ian R. Monk Disha B. Mohan Santhosh Mukundan Karthickeyan Chella Krishnan Sushma Prabhakara Johanna Snäll Angela Kearns Francois Vandenesch Mattias Svensson Malak Kotb Balasubramanian Gopal Gayathri Arakere Anna Norrby-Teglund

Methicillin-resistant Staphylococcus aureus (MRSA) is a major cause of skin and soft tissue infections. One of the highly successful and rapidly disseminating clones is MRSA ST22 commonly associated with skin tropism. Here we show that a naturally occurring single amino acid substitution (tyrosine to cysteine) at position 223 of AgrC determines starkly different ST22 S. aureus virulence phenoty...

2012
Zita Kovács Livia Simon-Sarkadi Ildikó Vashegyi Gábor Kocsy

The effect of wheat chromosome 5A on free amino acid accumulation induced by osmotic stress was compared in chromosome 5A substitution lines with different freezing tolerance. Treatment with 15% polyethylene glycol (PEG) resulted in greater total free amino acid content even after 3 days compared to the controls. The ratio of amino acids belonging to various amino acid families differed after 3...

2015
Miguel Arenas

Substitution models of evolution describe the process of genetic variation through fixed mutations and constitute the basis of the evolutionary analysis at the molecular level. Almost 40 years after the development of first substitution models, highly sophisticated, and data-specific substitution models continue emerging with the aim of better mimicking real evolutionary processes. Here I descr...

Journal: :Molecular biology and evolution 2008
Karen Lee Ring Andre R O Cavalcanti

Tetrahymena thermophila and Paramecium tetraurelia are ciliates that reassign TAA and TAG from stop codons to glutamine codons. Because of the lack of full genome sequences, few studies have concentrated on analyzing the effects of codon reassignment in protein evolution. We used the recently sequenced genome of these species to analyze the patterns of amino acid substitution in ciliates that r...

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