The curated CSAR-NRC benchmark sets provide valuable opportunity for testing or comparing the performance of both existing and novel scoring functions. We apply two different scoring functions, both independently and in combination, to predict the binding affinity of ligands in the CSAR-NRC data sets. One reported here for the first time employs multiple chemical-geometrical descriptors of the ...

Computer simulations of equilibrium binding studies of a mixture of two labeled ligands binding competitively to a single class of identical and independent sites (receptors) were performed to investigate how ligand heterogeneity affects the observed data in such studies. The simulated data are presented in Scatchard plots. Ligand heterogeneity was generally found to be indistinguishable from t...

During T cell development, thymocytes which are tolerant to self-peptides but reactive to foreign peptides are selected. The current model for thymocyte selection proposes that self-peptide-major histocompatibility complex (MHC) complexes that bind the T cell receptor with low affinity will promote positive selection while those with high affinity will result in negative selection. Upon thymocy...

G-quadruplexes (G4s) continue to gather wide attention in the field of chemical biology as their prevalence human genome and transcriptome strongly suggests that they play key regulatory roles cell biology. G4-specific, cell-permeable small molecules (G4-ligands) innovatively permit interrogation cellular circuitries order assess what extent G4s influence fate functions. Here, we report on mult...

Tumor-targeted therapies are playing growing roles in cancer research. The exploitation of these powerful therapeutic modalities largely depends on the discovery of tumor-targeting ligands. Phage display has proven a promising high throughput screening tool for the identification of novel specific peptides with high binding affinity to cancer cells. In the present study, we describe the use of ...