نتایج جستجو برای: variable numbers of tandem

تعداد نتایج: 21190302  

Journal: :FEMS microbiology reviews 2014
Kai Zhou Abram Aertsen Chris W Michiels

DNA tandem repeats (TRs), also designated as satellite DNA, are inter- or intragenic nucleotide sequences that are repeated two or more times in a head-to-tail manner. Because TR tracts are prone to strand-slippage replication and recombination events that cause the TR copy number to increase or decrease, loci containing TRs are hypermutable. An increasing number of examples illustrate that bac...

Journal: :Journal of clinical microbiology 2005
Anthony Ablordey Jean Swings Christine Hubans Karim Chemlal Camille Locht Françoise Portaels Philip Supply

The apparent genetic homogeneity of Mycobacterium ulcerans contributes to the poorly understood epidemiology of M. ulcerans infection. Here, we report the identification of variable number tandem repeat (VNTR) sequences as novel polymorphic elements in the genome of this species. A total of 19 potential VNTR loci identified in the closely related M. marinum genome sequence were screened in a co...

2014
Luzia Neri C. Machado Nadir R. Marcondes Clarice Q. Fijimura Leite Adolfo C. Barreto Santos Fernando Rogério Pavan Vanessa Pietrowski Baldin Aline Lemes Castilho Vera Lúcia D. Siqueira Lilian Cristiane Baeza Henri Berghs Rosilene Fressatti Cardoso

BACKGROUND At the triple border Brazil/Paraguay/Argentina there is easy mobility from one city to another for economic and tourism activities. This constant and fast population mobility is mainly to visit Iguazu Falls, in the Iguazu River, on the border of the Brazilian state of Paraná and the Argentina. As the incidence of tuberculosis is high in this setting, our study aimed to establish a fi...

Journal: :Journal of clinical microbiology 2010
Sahal A M Al-Hajoj Onno Akkerman Ida Parwati Saad al-Gamdi Zeaur Rahim Dick van Soolingen Jakko van Ingen Philip Supply Adri G M van der Zanden

Five Mycobacterium tuberculosis isolates were obtained from three body sites from a Dutch patient. The isolates displayed a single genotype by 24-locus MIRU-VNTR typing (except for a single locus not amplified from one isolate) but were differentiated by small variations in IS6110 fingerprints, spoligotypes, 6 hypervariable MIRU-VNTR loci, and/or DiversiLab profiles, revealing patterns of micro...

2011
Jian Zhang Seiha Heng Stéphanie Le Moullec Guislaine Refregier Brigitte Gicquel Christophe Sola Bertrand Guillard

BACKGROUND Cambodia is among the 22 high-burden TB countries, and has one of the highest rates of TB in South-East Asia. This study aimed to describe the genetic diversity among clinical Mycobacterium tuberculosis complex (MTC) isolates collected in Cambodia and to relate these findings to genetic diversity data from neighboring countries. METHODS We characterized by 24 VNTR loci genotyping a...

2013
Sofia O. Viegas Adelina Machado Ramona Groenheit Solomon Ghebremichael Alexandra Pennhag Paula S. Gudo Zaina Cuna Egídio Langa Paolo Miotto Daniela M. Cirillo Nalin Rastogi Rob M. Warren Paul D. van Helden Tuija Koivula Gunilla Källenius

The Beijing genotype is a lineage of Mycobacterium tuberculosis that is distributed worldwide and responsible for large epidemics, associated with multidrug-resistance. However, its distribution in Africa is less understood due to the lack of data. Our aim was to investigate the prevalence and possible transmission of Beijing strains in Mozambique by a multivariate analysis of genotypic, geogra...

Journal: :Journal of clinical microbiology 2014
Caroline Allix-Béguec Céline Wahl Madeleine Hanekom Vladyslav Nikolayevskyy Francis Drobniewski Shinji Maeda Isolina Campos-Herrero Igor Mokrousov Stefan Niemann Irina Kontsevaya Nalin Rastogi Sofia Samper Li-Hwei Sng Robin M Warren Philip Supply

Mycobacterium tuberculosis Beijing strains represent targets of special importance for molecular surveillance of tuberculosis (TB), especially because they are associated with spread of multidrug resistance in some world regions. Standard 24-locus mycobacterial interspersed repetitive-unit-variable-number tandem-repeat (MIRU-VNTR) typing lacks resolution power for accurately discriminating clos...

Journal: :Journal of clinical microbiology 2004
Andrea L Gibson Glyn Hewinson Tony Goodchild Brian Watt Alistair Story Jacqueline Inwald Francis A Drobniewski

Mycobacterium bovis is the causative agent of bovine tuberculosis, with a wide host range. Fifty human M. bovis isolates were typed using spoligotyping and variable number tandem repeats (VNTR). Fifteen of these spoligotypes have not yet been recorded in cattle. The predominant spoligotype in humans and cattle was subdivided by VNTR.

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