We have previously reported that the single nucleotide polymorphism (SNP) rs12553612 in IFNA8 is associated with better overall survival of glioma patients with the AA-genotype compared with patients with the AC-genotype. As rs12553612 is located in the IFNA8 promoter, we hypothesized that the A-allele allows for an enhanced IFNA8 promoter activity compared with the C-allele. Reporter assays in...

Environments that vary within a generation of an organism provide opportunities for adaptation if the level of variation is severe and predictable. We describe a model of evolution in such environments with genotypes that show trade-offs in viability and fecundity. One genotype develops rapidly and has superior viability but reduced fertility relative to the alternative genotype. Conditions tha...

Individuals with a particular variant of the gene phosphoglucose isomerase (Pgi) have been shown to have superior dispersal capacity and fecundity in the Glanville fritillary butterfly (Melitaea cinxia), raising questions about the mechanisms that maintain polymorphism in this gene in the field. Here, we investigate how variation in the Pgi genotype affects female and male life history under co...

Improving breeding has been widely utilized in crop breeding and contributed to yield and quality improvement, yet few researches have been done to analyze genetic architecture underlying breeding improvement comprehensively. Here, we collected genotype and phenotype data of 99 cultivars from the complete pedigree including Huanghuazhan, an elite, high-quality, conventional indica rice that has...

Fat quality is determined by the composition of fatty acids. Genetic relationships between this composition and single nucleotide polymorphisms (SNPs) in the stearoyl-CoA desaturase1 (SCD1) gene were examined using 513 Korean native cattle. Single and epistatic effects of 7 SNP genetic variations were investigated, and the multifactor dimensionality reduction (MDR) method was used to investigat...

A multiple-tubes procedure is described for using PCR to determine the genotype of a very small DNA sample. The procedure involves dividing the sample among several tubes, then amplifying and typing the contents of each tube separately. The results are analyzed by a statistical procedure which determines whether a genotype can be conclusively assigned to the DNA sample. Simulation studies show ...

Analysis of genotype-by-environment interaction (GEI) is critical in the local potato breeding and selection programme to obtain information on performance genotypes for yield adaptability stability. The objective this study was assess marketable tuber 18 advanced clones compared commercial variety Spunta at four locations (Bigara, Réduit, St. Antoine Rivière du Poste), representative major soi...

Genotype by environment interaction (GxE) influences and complicates the selection of superior genotypes in trials by confounding the determination of true genetic values. Trials therefore need to be planted over several locations and seasons. The South African Sugarcane Research Institute (SASRI) operates seven regional breeding programmes representing the major agro-climatic regions of the su...

The myostatin (MSTN) gene was studied as a candidate genetic marker for growth traits. We investigated polymorphisms of the MSTN gene in 664 individuals from four goat populations and applied PCR-SSCP and DNA sequencing analysis to reveal two single nucleotide polymorphisms (DQ167575: g.368A>C (p.Lys49Thr) and g.4911C>T. At g.368A>C locus, the frequencies of g.368A allele were 0.75–0.81, and th...

Genetic variability related to the catechol-O-methyltransferase (COMT) gene has received increasing attention in the last 15years, in particular as a potential modulator of the neural substrates underlying inhibitory processes and updating in working memory (WM). In an event-related functional magnetic resonance imaging (fMRI) study, we administered a modified version of the Sternberg probe rec...