To discover the structural and functional novel glycoside hydrolase enzymes from soil fungal communities that decompose cellulosic biomass, transcripts of functional genes in a forest soil were analyzed. Pyrosequencing of the Avicel and wheat-amended soil cDNAs produced 56,084 putative protein-coding sequence (CDS) fragments, and the most dominant group of putative CDSs based on the taxonomic a...

Microbial community structure and functions of rhizosphere soil of rice were investigated after applying low and high doses of nitrogenous fertilizer and Phomopsis liquidambari. Average well color development, substrate richness, catabolic diversity and soil enzymes activities varied after applying N-fertilizer and P. liquidambari and were greater in P. liquidambari treated soil than only N-fer...

Extracting high-purity DNA directly from soil has become essential for the study of microorganisms in environmental samples. However, many soils contain compounds that inhibit enzymes involved in manipulating DNA. In this study, chemical flocculation using multivalent cations was investigated as a potential method for eliminating soil-based inhibitors during the extraction process. The addition...

In the past century, several explosive compounds have become the major soil contaminants causing health and economic challenges to the society. In the U.S. alone millions of hectares of land are contaminated by various forms of explosives. The two most dangerous explosives, 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5trinitro-1,3,5-triazine (Royal Demolition Explosive; RDX), are major enviro...

Increases in the growth rate of plants and microbes in the Mojave Desert in response to predicted increases in precipitation and CO2 due to global climate change may induce nutrient limitations. This study was designed to measure the pool of potentially bioavailable nutrients in soils of the Mojave Desert. Soils were collected from shrub and interspace microsites and then subjected to amendment...

The importance of the earthworms in the agricultural practices is well known. The increasing applications of pesticides and chemicals in the agricultural farms have adversely influenced the flora and fauna of the soil. Earthworms which immensely contribute in increasing the quality and fertility of agricultural soil are reported be worst hit organisms under such conditions. Recent reports have ...

Soil contamination by heavy metals has increased noticeably within the past years. Unlike organic compounds, metals cannot degrade; therefore effective cleanup is required to reduce its toxicity. This experiment was undertaken to investigate the comparative potential of Panicum maximum and Axonopus compressus to bioremediate zinc polluted soils, the impact of Zn on the antioxidant defense syste...

Urban grasslands not only provide a recreational venue for urban residents, but also sequester organic carbon in vegetation and soils through photosynthesis, and release carbon dioxide through respiration, which largely contribute to carbon storage and fluxes at regional and global scales. We investigated organic carbon and nitrogen pools in subtropical turfs and found that dissolved organic ca...

Metagenomic screening and conventional cultivation have been used to exploit microbial lipolytic enzymes in nature. We used an indigenous forest soil (NS) and oil-fed enriched soil (OS) as microbial and genetic resources. Thirty-four strains (17 each) of lipolytic bacteria were isolated from the NS and OS microcosms. These isolates were classified into the (sub)phyla Betaproteobacteria, Gammapr...

The goal of this study was to isolate and identify Staphylococcus aureus from clinical environmental sources. This also looked at the prevalence distribution different virulence enzymes among its isolates. For objective, 65 samples were collected dispersed 50 distinct 15 (soil, water, air) samples. results revealed that 20 bacterial isolates S. aureus. isolation rate 30.76% all samples, with 13...