نتایج جستجو برای: genomic modification

تعداد نتایج: 240732  

2014
T. C. Balamurugan S. Jayachandran

-The modification of the gut microbiota with new feed additives such as probiotics, prebiotics toward host protection is to support animal health. Out of these probiotics, prebiotics are widely used. Genomic knowledge about gut microbiota as well as its deviations will advance the selection of new and specific probiotics. The suitable combination probiotics, prebiotics decrease the risk of inte...

Journal: :National science review 2014
Yuanyuan Zhao Xuemei Chen

Cytosine DNA methylation is an epigenetic modification in eukaryotes that maintains genome integrity and regulates gene expression. The DNA methylation patterns in plants are more complex than those in animals, and plants and animals have common as well as distinct pathways in regulating DNA methylation. Recent studies involving genetic, molecular, biochemical and genomic approaches have greatl...

2011
Daphne W. Bell Nilabja Sikdar Kyoo-young Lee Jessica C. Price Raghunath Chatterjee Hee-Dong Park Jennifer Fox Masamichi Ishiai Meghan L. Rudd Lana M. Pollock Sarah K. Fogoros Hassan Mohamed Christin L. Hanigan Suiyuan Zhang Pedro Cruz Gabriel Renaud Nancy F. Hansen Praveen F. Cherukuri Bhavesh Borate Kirk J. McManus Jan Stoepel Payal Sipahimalani Andrew K. Godwin Dennis C. Sgroi Maria J. Merino Gene Elliot Abdel Elkahloun Charles Vinson Minoru Takata James C. Mullikin Tyra G. Wolfsberg Philip Hieter Dae-Sik Lim Kyungjae Myung

ATAD5, the human ortholog of yeast Elg1, plays a role in PCNA deubiquitination. Since PCNA modification is important to regulate DNA damage bypass, ATAD5 may be important for suppression of genomic instability in mammals in vivo. To test this hypothesis, we generated heterozygous (Atad5(+/m)) mice that were haploinsuffficient for Atad5. Atad5(+/m) mice displayed high levels of genomic instabili...

2015
Halfdan Rydbeck Geir Kjetil Sandve Egil Ferkingstad Boris Simovski Morten Rye Eivind Hovig

Clustering is a popular technique for explorative analysis of data, as it can reveal subgroupings and similarities between data in an unsupervised manner. While clustering is routinely applied to gene expression data, there is a lack of appropriate general methodology for clustering of sequence-level genomic and epigenomic data, e.g. ChIP-based data. We here introduce a general methodology for ...

2013
Anuj Srivastava Xiaoyu Zhang Sal LaMarca Liming Cai Russell L. Malmberg

Dynamic regulation and packaging of genetic information is achieved by the organization of DNA into chromatin. Nucleosomal core histones, which form the basic repeating unit of chromatin, are subject to various post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitinylation. These modifications have effects on chromatin structure and, along with DNA meth...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2008
Erika Brunet Loic Perrouault Victoria Roig Slimane Ait-Si-Ali Ulysse Asseline Jean-Paul Concordet Carine Giovannangeli

The inefficiency of gene modification by homologous recombination can be overcome by the introduction of a double-strand break (DSB) in the target. Engineering the endonucleases needed, however, remains a challenging task that limits widespread application of nuclease-driven gene modification. We report here that conjugates of orthophenanthroline (OP), a DNA cleaving molecule, and triplex-formi...

Journal: :Nature communications 2014
Bo Cao Chao Chen Michael S DeMott Qiuxiang Cheng Tyson A Clark Xiaolin Xiong Xiaoqing Zheng Vincent Butty Stuart S Levine George Yuan Matthew Boitano Khai Luong Yi Song Xiufen Zhou Zixin Deng Stephen W Turner Jonas Korlach Delin You Lianrong Wang Shi Chen Peter C Dedon

Bacterial phosphorothioate (PT) DNA modifications are incorporated by Dnd proteins A-E and often function with DndF-H as a restriction-modification (R-M) system, as in Escherichia coli B7A. However, bacteria such as Vibrio cyclitrophicus FF75 lack dndF-H, which points to other PT functions. Here we report two novel, orthogonal technologies to map PTs across the genomes of B7A and FF75 with >90%...

2015
Bo Cao Xiaoqing Zheng Qiuxiang Cheng Fen Yao Tao Zheng I. Ramesh Babu Huchen Zhou Peter Dedon Delin You

A wide variety of prokaryotes possess DNA modifications consisting of sequence-specific phosphorothioates (PT) inserted by members of a five-gene cluster. Recent genome mapping studies revealed two unusual features of PT modifications: short consensus sequences and partial modification of a specific genomic site in a population of bacteria. To better understand the mechanism of target selection...

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