We studied genetic relationships among 5069 Mycobacterium tuberculosis strains recovered from patients enrolled in 4 population-based studies in the United States and Europe, by analysis of 36 synonymous single-nucleotide polymorphisms (SNPs). All strains were assigned to 1 of 9 major genetic clusters based on sSNP profile. The same 9 genetic clusters were revealed by analysis of 227 nonsynonym...

The use of DNA sequences to elucidate the history of relationships of organisms is widespread, and focus on our species has been intense. This paper examines some simple aspects of using genetic information to analyze relationships within and amongst humans. Clonal markers (mtDNA and Y chromosomal DNA) have always shown a high degree of structure and robustness when analyzed for hierarchical st...

This paper describes the application of an artificial immune system to a scheduling application. A novel approach multi-modal immune algorithm is proposed for finding optimal solutions to job-shop scheduling problems emulating the features of a biological immune system. Inter-relationships within the proposed algorithm resemble antibody molecule structure, antibody–antigen relationships in term...

Theories based on competition for resources predict a monotonic negative relationship between population density and individual biomass in plant populations. They do not consider the role of facilitative interactions, which are known to be important in high stress environments. Using an individual-based 'zone-of-influence' model, we investigated the hypothesis that the balance between facilitat...

The cellular organization and relationships among precursors that initiate embryonic angiogenesis and hematopoiesis in the human have yet to be characterized. Here, we identify a subpopulation of primitive endothelial-like cells derived from human embryonic stem cells (hESCs) that express PECAM-1, Flk-1, and VE-cadherin, but not CD45 (CD45negPFV cells), and that are uniquely responsible for end...