The Process Hitting (PH) is a recently introduced framework to model concurrent processes. Its major originality lies in a specific restriction on the causality of actions, which makes the formal analysis of very large systems tractable. PH is suitable to model Biological Regulatory Networks (BRNs) with complete or partial knowledge of cooperations between regulators by defining the most permis...

The Process Hitting (PH) is a recently introduced framework to model concurrent processes. It is notably suitable to model Biological Regulatory Networks (BRNs) with partial knowledge of cooperations by defining the most permissive dynamics. On the other hand, the qualitative modeling of BRNs has been widely addressed using René Thomas’ formalism. Given a PH model of a BRN, we first tackle the ...

In this study the Fuzzy Robust Principal Component Analysis (FRPCA) method is used to monitor a biological nitrogen removal process, performances of this method are then compared with classical principal component analysis. The obtained results demonstrate the performances superiority of this robust extension compared with the conventional one. In this method fuzzy variant of PCA uses fuzzy mem...

Robert S. Parker is an associate professor in the Department of Chemical and Petroleum Engineering at the University of Pittsburgh. His educational interests focus on the area of dynamical systems analysis and control. He is currently involved with the implementation of an integrated curriculum and the development of cross-cutting biological problems to assist students with integrating material...

Qualitative formalisms offer a well-established alternative to the more traditionally used differential equation models of Biological Regulatory Networks (BRNs). These formalisms led to numerous theoretical works and practical tools to understand emerging behaviors. The analysis of the dynamics of very large models is however a rather hard problem, which led us to previously introduce the Proce...

A study was conducted to evaluate the feasibility of Activated Sludge Process (ASP) for the treatment of tannery wastewater and to develop a simple design criteria under local conditions. A bench scale model comprising of an aeration tank and final clarifier was used for this purpose. The model was operated continuously for 267 days. Settled tannery wastewater was used as influent to the aerati...

Background: High concentration of salt makes biological treatment impossible due to bacterial plasmolysis. The present research studies the process of electrochemical oxidation efficiency and optimal levels as important factors affecting pH, salt concentration, reaction time and applied voltage. Methods: The sample included graphite electrodes with specifications of 2.5 cm diameter and 15 cm he...

For over 150 years, ecologists have been striving to explain fundamental patterns of biological diversity, such as the observation that communities invariably consist of common and rare species, and to unravel the processes that underpin these patterns. This task is increasingly urgent given the accelerating loss of biological diversity. Although fishes are the most diverse vertebrate taxon and...

Nature has demonstrated some subtle and intricate mechanisms for selectively controlling the mobility of metal pollutants in the environment. However, the application of this science to technology has been disappointing. A small number of pilot-plant studies have been carried out to investigate the potential of microorganisms (primarily bacteria) to remove metals from liquid wastes but only one...

An environment has been developed which comprises mathematical methods, concepts, and tools to enable the processing of experimental data to usable new insights about biological systems. Therefore, a mathematical modelling concept Hybrid Petri-Nets for biological applications (HPNbio) – has been defined which is properly adapted to the demands of biological process. This concept has been implem...