نتایج جستجو برای: atomistic water models
تعداد نتایج: 1430902 فیلتر نتایج به سال:
Phospholipids are essential building blocks of biological membranes. Despite a vast amount of very accurate experimental data, the atomistic resolution structures sampled by the glycerol backbone and choline headgroup in phoshatidylcholine bilayers are not known. Atomistic resolution molecular dynamics simulations have the potential to resolve the structures, and to give an arrestingly intuitiv...
Solar-driven water splitting is a key photochemical reaction that underpins the feasible and sustainable production of solar fuels. An amorphous cobalt-phosphate catalyst (Co-Pi) based on earth-abundant elements has been recently reported to efficiently promote water oxidation to protons and dioxygen, a main bottleneck for the overall process. The structure of this material remains largely unkn...
We present a lattice model of water confined in a hydrophobic nanotube. Using analytical methods and computer simulation, we find conditions where filled and empty tubes can be degenerate in equilibrium. We further find that flow of water molecules through a filled tube with appropriate but simple stochastic rules can be interpreted as water conduction in a pulse-like fashion. These two results...
We develop a new equation to describe solvation structure near solid-liquid interface at the atomic-level. The developed equation focuses on anisotropy of solvation structure near the interface by using two-dimensional density distribution of solvent along two directions, one of which is perpendicular to the interface and the other is parallel to the interface. As a first application of the equ...
Multiscale methods are the most efficient way to address the interlinked spatiotemporal scales encountered in soft matter and molecular liquids. In the literature reported hybrid approaches span from quantum to atomistic, coarse-grained, and continuum length scales. In this article, we present the hybrid coupling of the molecular dynamics (MD) and dissipative particle dynamics (DPD) methods, br...
Molecular dynamics (MD) simulations have been used to study the stability of calcite nanoparticles ranging in size from 18 to 324 f.u., both in vacuo and in the presence of explicit water molecules. In vacuo, the smallest particles become highly disordered during the MD simulation due to rotation and translation of the undercoordinated CO(3) (2-) anions at the edges of the particles. As the nan...
We develop a general multiscale method for coupling atomistic and continuum simulations using the framework of the heterogeneous multiscale method (HMM). Both the atomistic and the continuum models are formulated in the form of conservation laws of mass, momentum and energy. A macroscale solver, here the finite volume scheme, is used everywhere on a macrogrid; whenever necessary the macroscale ...
Radio-frequency (RF) electromagnetic fields are readily absorbed in biological matter and lead to dielectric heating. To understand how RF radiation interacts with macromolecular structures and possibly influences biological function, a quantitative description of dielectric absorption and heating at nanometer resolution beyond the usual effective medium approach is crucial. We report an exempl...
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