نتایج جستجو برای: atomistic water models

تعداد نتایج: 1430902  

2015
Alexandru Botan Fernando Favela-Rosales Patrick F. J. Fuchs Matti Javanainen Matej Kanduč Waldemar Kulig Antti Lamberg Claire Loison Alexander Lyubartsev Markus S. Miettinen Luca Monticelli Jukka Määttä O. H. Samuli Ollila Marius Retegan Tomasz Róg Hubert Santuz Joona Tynkkynen

Phospholipids are essential building blocks of biological membranes. Despite a vast amount of very accurate experimental data, the atomistic resolution structures sampled by the glycerol backbone and choline headgroup in phoshatidylcholine bilayers are not known. Atomistic resolution molecular dynamics simulations have the potential to resolve the structures, and to give an arrestingly intuitiv...

Journal: :ACS nano 2012
Xiao Liang Hu Simone Piccinin Alessandro Laio Stefano Fabris

Solar-driven water splitting is a key photochemical reaction that underpins the feasible and sustainable production of solar fuels. An amorphous cobalt-phosphate catalyst (Co-Pi) based on earth-abundant elements has been recently reported to efficiently promote water oxidation to protons and dioxygen, a main bottleneck for the overall process. The structure of this material remains largely unkn...

2003
Lutz Maibaum David Chandler

We present a lattice model of water confined in a hydrophobic nanotube. Using analytical methods and computer simulation, we find conditions where filled and empty tubes can be degenerate in equilibrium. We further find that flow of water molecules through a filled tube with appropriate but simple stochastic rules can be interpreted as water conduction in a pulse-like fashion. These two results...

Journal: :The Journal of chemical physics 2011
Kenji Iida Hirofumi Sato

We develop a new equation to describe solvation structure near solid-liquid interface at the atomic-level. The developed equation focuses on anisotropy of solvation structure near the interface by using two-dimensional density distribution of solvent along two directions, one of which is perpendicular to the interface and the other is parallel to the interface. As a first application of the equ...

Journal: :The Journal of chemical physics 2017
Julija Zavadlav Matej Praprotnik

Multiscale methods are the most efficient way to address the interlinked spatiotemporal scales encountered in soft matter and molecular liquids. In the literature reported hybrid approaches span from quantum to atomistic, coarse-grained, and continuum length scales. In this article, we present the hybrid coupling of the molecular dynamics (MD) and dissipative particle dynamics (DPD) methods, br...

Journal: :The Journal of chemical physics 2007
David J Cooke James A Elliott

Molecular dynamics (MD) simulations have been used to study the stability of calcite nanoparticles ranging in size from 18 to 324 f.u., both in vacuo and in the presence of explicit water molecules. In vacuo, the smallest particles become highly disordered during the MD simulation due to rotation and translation of the undercoordinated CO(3) (2-) anions at the edges of the particles. As the nan...

2005
Xiantao Li

We develop a general multiscale method for coupling atomistic and continuum simulations using the framework of the heterogeneous multiscale method (HMM). Both the atomistic and the continuum models are formulated in the form of conservation laws of mass, momentum and energy. A macroscale solver, here the finite volume scheme, is used everywhere on a macrogrid; whenever necessary the macroscale ...

Journal: :The journal of physical chemistry. B 2014
Stephan Gekle Roland R Netz

Radio-frequency (RF) electromagnetic fields are readily absorbed in biological matter and lead to dielectric heating. To understand how RF radiation interacts with macromolecular structures and possibly influences biological function, a quantitative description of dielectric absorption and heating at nanometer resolution beyond the usual effective medium approach is crucial. We report an exempl...

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