6 Comparison 30 7 K-means 35 A Defaults File Format 40 B Using STEM for Standard Gene Ontology Enrichment Analysis 42 C Gene Annotation Sources 43 ii 1 Introduction Welcome to STEM! STEM is an acronym for the Short Time-series Expression Miner, a software program designed for clustering, comparing, and visualizing gene expression data from short time series microarray experiments (∼8 time point...

Preface The past few years have witnessed a tremendous interest in logic-based probabilistic learning as testified by the number of formalisms and systems and their applications. Logic-based probabilistic learning is a multidisciplinary research area that integrates relational or logic formalisms, probabilistic reasoning mechanisms, and machine learning and data mining principles. Logic-based p...

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......................................................................................................................1 Part A: Scientific background.....................................................................................3 1) Introduction........................................................................................................3 2) The Bureau of Meteorology Statistical...

This is the user manual for the software package BSEPACK (Bethe--Salpeter Eigenvalue Solver Package).