Minimum mode following algorithms are widely used for saddle point searching in chemical and material systems. Common to these algorithms is a component to find the minimum curvature mode of the second derivative, or Hessian matrix. Several methods, including Lanczos, dimer, Rayleigh-Ritz minimization, shifted power iteration, and locally optimal block preconditioned conjugate gradient, have be...

We present a program qhash, based on q-gram filtration and high-dimensional search, to find gapped local similarities between two sequences. Our approach differs from past q-gram-based approaches in two main aspects. Our filtration step uses algorithms for a sparse all-pairs problem, while past studies use suffix-tree-like structures and counters. Our program works in sequence-sequence mode, wh...

This paper describes several new techniques for direction of arrival (DOA) estimation using arrays composed of multiple translated and uncalibrated subarrays. The new algorithms can be thought of as generalizations of the MUSIC, Root-MUSIC, and MODE techniques originally developed for fully calibrated arrays. The advantage of these new approaches is that the DOAs can be estimated using either a...

This study aimed to evaluate the impact of a brief mindfulness practice on reducing the carryover effect caused by a previous task set and to determine the mechanism for its effectiveness. Experiment 1 showed that a memorized color interfered with subsequent visual search as a singleton distractor only when color was a defining feature for the search target. In Experiment 2, three interventions...

We describe a method of using a Lagrange multiplier to make a locally optimal trade off between rate and distortion in the motion search for video sequences, while maintaining a constant bit rate channel. Simulation of this method shows that it gives up to 3.5 dB PSNR improvement in a high motion sequence. A locally rate-distortion (R-D) optimal mode selection mechanism is also described. This ...

Confident peptide identification is one of the most important components in mass-spectrometry-based proteomics. We propose a method to properly combine the results from different database search methods to enhance the accuracy of peptide identifications. The database search methods included in our analysis are SEQUEST (v27 rev12), ProbID (v1.0), InsPecT (v20060505), Mascot (v2.1), X! Tandem (v2...

The group of rigid motions is considered to guide the search for a natural system of space-time coordinates in General Relativity. This search leads us to a natural extension of the space-times that support Painlevé–Gullstrand synchronization. As an interesting example, here we describe a system of rigid coordinates for the cross mode of gravitational linear plane waves.

We advance and apply the mathematical theory of search games to model the problem faced by a predator searching for prey. Two search modes are available: ambush and cruising search. Some species can adopt either mode, with their choice at a given time traditionally explained in terms of varying habitat and physiological conditions. We present an additional explanation of the observed predator a...