We introduce LEISR (Likehood Estimation of Individual Site Rates, pronounced "laser"), a tool to infer relative evolutionary rates from protein and nucleotide data, implemented in HyPhy. LEISR is based on the popular Rate4Site (Pupko et al., 2002) approach for inferring relative site-wise evolutionary rates, primarily from protein data. We extend the original method for more general use in seve...

In 73 relative-rate tests involving the sequences of 17 genes between humans and six nonhuman primate taxa, there is only one significant (P less than 0.01) difference in evolutionary rate--i.e., that between human and Old World-monkey psi eta-globin genes. No evolutionary rate difference between humans and Old World monkeys is evident from analysis of 18 other genes with a total length of 6 kb...

In classical growth analysis, relative growth rate (RGR) is calculated as RGR = (ln W2 - ln W1)/(t2 - t1), where W1 and W2 are plant dry weights at times t1 and t2. Since RGR is usually calculated using destructive harvests of several individuals, an obvious approach is to substitute W1 and W2 with sample means W1 and W2. Here we demonstrate that this approach yields a biased estimate of RGR wh...

 In this paper by use of mathematical modeling of an observer [14,15] the notion of relative information functional for relative dynamical systemson compact metric spaces is presented. We extract the information function ofan ergodic dynamical system (X,T) from the relative information of T fromthe view point of observer χX, where X denotes the base space of the system.We also generalize the in...

Five alfalfa (Medicago sativa L) cultivars from different areas of Iran were evaluated for oxidative markers under salinity conditions. Plants were grown in hydroponic condition by Hoagland nutrient solution containing different amounts of NaCl (control, 50 and 100 mM). Relative growth rate, membrane stability, lipid peroxidation, proline, hydrogen peroxide and relative water contents were dete...