Due to its fundamental importance to molecular biology, great interest has continued to persist in developing novel techniques to efficiently characterize the thermodynamic and structural features of liquid water. A particularly fruitful approach, first applied to liquid water by Lazaridis and Karplus, is to use molecular dynamics or Monte Carlo simulations to collect the required statistics to...

Thermodynamic data are often used to calibrate or test amomic-level (AL) force fields for molecular dynamics (MD) simulations. In contrast, the majority of coarse-grained (CG) force fields do not rely extensively on thermodynamic quantities. Recently, a CG force field for lipids, hydrocarbons, ions, and water, in which approximately four non-hydrogen atoms are mapped onto one interaction site, ...

This work aims to achieve deep insight into the phenomenon of phase transformation upon rapid cooling in metal systems and reveal the physical meaning of scatter in the time taken to reach crystallization. The total number of pure metals considered in this work accounts for 14. Taking pure copper as an example, the correlation between phase selection of crystal or glass and cooling rate was inv...

In this paper we explore the effects of the electronic structure, the charge state, and the nature of energy distribution of isomers on the thermodynamic properties of sodium clusters. The focus of the work is to isolate the effects of these ingredients on thermodynamic behavior by choosing specific clusters. Toward this end we investigate Na(39) (-), Na(40), and Na(41) (+), which are the elect...

The mean ionic activity coefficients of aqueous NaCl solutions of varying concentrations at 298.15 K and 1 bar have been obtained from molecular dynamics simulations by gradually turning on the interactions of an ion pair inserted into the solution. Several common non-polarizable water and ion models have been used in the simulations. Gibbs-Duhem equation calculations of the thermodynamic activ...

Hard-sphere molecular dynamics (MD) simulation results, with six-figure accuracy in the thermodynamic equilibrium pressure, are reported and used to test a closed-virial equation-of-state. This latest equation, with no adjustable parameters except known virial coefficients, is comparable in accuracy both to Padé approximants, and to numerical parameterizations of MD data. There is no evidence o...

We examine the question of whether the formal expressions of equilibrium statistical mechanics can be applied to time independent nondissipative systems that are not in true thermodynamic equilibrium and are nonergodic. By assuming that the phase space may be divided into time independent, locally ergodic domains, we argue that within such domains the relative probabilities of microstates are g...

Wissam A. Saidi,1,* Minyoung Lee,2 Liang Li,3 Guangwen Zhou,3 and Alan J. H. McGaughey2,† 1Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, United States 2Department of Mechanical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States 3Department of Mechanical Engineering, State University of New York, Bi...

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The thermodynamic response functions of water exhibit an anomalous increase upon cooling that becomes strongly amplified in the deeply supercooled regime due to structural fluctuations between disordered and tetrahedral local structures. Here, we compare structural data from recent x-ray laser scattering measurements of water at 1 bar and temperatures down to 227 K with structural properties co...