Ten microsatellite loci isolated from Iris hexagona are described. All these loci are polymorphic, with three to 13 alleles across 24 individuals from a single natural population. Heterozygosity ranged from 0.125 to 0.870. Three loci depart significantly from Hardy–Weinberg equilibrium in our test population. The test population shows significant heterozygote deficiency in these and two other l...

Using an (AG)13 enriched genomic library of Mugil cephalus, 12 polymorphic microsatellite loci were isolated and characterized in a test population; the number of alleles ranged from 2 to 11. The observed and expected heterozygosities ranged from 0.2593 to 0.8966 and from 0.3047 to 0.8454, respectively. Two loci deviated from Hardy-Weinberg equilibrium; linkage disequilibrium among the 12 loci ...

Genotyping was done using ARMS-PCR for rs1333049 and rs10757274 in their study. When we first looked at the genotype frequencies, we observed a substantial excess of heterozygote subjects for both SNPs. Specifically, the relative excess of heterozygosity (REH) (2), a measure for the strength of deviation from Hardy-Weinberg equilibrium (HWE), was approximately 137% for rs1333049 in controls (RE...

Using singular perturbation methods, the existence and stability of traveling wave solutions for a density-dependent selection migration model in population genetics is proved. Single locus and two alleles are assumed, and it is also assumed that the fitnesses of the heterozygotes in the population are close to but below those of the homozygotes. Unlike previous models, this paper does not assu...

Hardy-Weinberg equilibrium and neutrality are assumptions shared by all measures of genetic distance and structure computed in the present report. In order to evaluate the impact of ignoring departures from these theoretical models, we calculated Reynolds’ distance, FST, Nei’s D and ancestry coefficients using two sets of markers: all 127 markers passing quality control ( ) and a reduced panel ...

In this paper, we review and explore some important aspects of a key project on applied statistical methods supported by the National Natural Science Foundation of China. Our discussion focuses on (1) statistical inference under order restriction, (2) structural learning of graphical models, and (3) statistical analysis on haplotypes and recombination fractions in genetics and some research res...

Galium catalinense subspecies acrispum (Rubiaceae) is a state-endangered perennial shrub endemic to San Clemente Island. Eight polymorphic microsatellite loci were isolated from G. catalinense ssp. acrispum. These loci show high levels of variability, averaging 6.5 alleles per locus and an expected heterozygosity of 0.550. One locus exhibited significant deviations from Hardy-Weinberg equilibri...

For assessment of genetic association between single-nucleotide polymorphisms (SNPs) and disease status, the logistic-regression model or generalized linear model is typically employed. However, testing for deviation from Hardy-Weinberg proportion in a patient group could be another approach for genetic-association studies. The Hardy-Weinberg proportion is one of the most important principles i...

In genetic association studies, tests for Hardy-Weinberg proportions are often employed as a quality control checking procedure. Missing genotypes are typically discarded prior to testing. In this paper we show that inference for Hardy-Weinberg proportions can be biased when missing values are discarded. We propose to use multiple imputation of missing values in order to improve inference for H...