1 RESUMO 5 GENERAL INTRODUCTION 9 Estuaries: drivers, pressures and responses 9 Estuarine fish fauna 11 Recruitment variability of marine species 13 Climate forcing and systems’ changes 16 Assessing ecological status of transitional waters 18 Study site – the Mondego estuary 21 References 24 GENERAL AIM AND THESIS OUTLINE 35 CHAPTER I The influence of an extreme drought event in the fish commun...

Identifying causes of structural ecosystem shifts often requires understanding trophic structure, an important determinant of energy flow in ecological communities. In coastal pelagic ecosystems worldwide, increasing jellyfish (Cnidaria and Ctenophora) at the expense of small fish has been linked to anthropogenic alteration of basal trophic pathways. However, this hypothesis remains untested in...

To detect changes in ecosystems due to human impact, experimental designs must include replicates at the appropriate scale to avoid pseudoreplication. Although coastal lagoons, with their highly variable environmental factors and biological assemblages, are relatively well-studied systems, very little is known about their natural scales of variation. In this study, we investigate the spatio-tem...

Body size is frequently claimed to be a major determinant of animal trophic interactions, yet few studies have explored relationships between body size and trophic interactions in rivers, especially within the tropics. We examined relationships between body size and trophic position (TP) within fish assemblages in four lowland rivers of the Lower Mekong Basin in Cambodia. Stable isotope analysi...

Worldwide, increasing coastal development has played a major role in shaping coral reef species assemblages, but the mechanisms underpinning distribution patterns remain poorly understood. Recent research demonstrated delayed development in larval fishes exposed to suspended sediment, highlighting the need to further understand the interaction between suspended sediment as a stressor and energe...

Assemblages of metazoan ectoparasites of 79 species and gastrointestinal helminths of eight species of marine fishes were analysed to examine whether nestedness is related to sample size, abundance, species richness, and prevalence of infection, and whether the use of z-scores or Monte Carlo simulations yields different results. No significant differences in the number of nested assemblages wer...