Embryos obtained via superovulation are necessary for mammalian artificial reproduction, and viability is a key determinant of success. Nonfreezing storage at 4 C is possible, but currently used storage solutions can maintain embryo viability for only 24-48 h. Here we found that 10 mg/ml antifreeze protein (AFP) dissolved in culture medium 199 with 20% (v/v) fetal bovine serum and 25 mM HEPES c...

The currently existing theory of fluorescence correlation spectroscopy (FCS) is based on the linear fluctuation theory originally developed by Einstein, Onsager, Lax, and others as a phenomenological approach to equilibrium fluctuations in bulk solutions. For mesoscopic reaction-diffusion systems with nonlinear chemical reactions among a small number of molecules, a situation often encountered ...

The identification of human cancer-related microRNAs (miRNAs) is important for cancer biology research. Although several identification methods have achieved remarkable success, they have overlooked the functional information associated with miRNAs. We present a computational framework that can be used to prioritize human cancer miRNAs by measuring the association between cancer and miRNAs base...

The applications and implications of two recently addressed asymptotic descriptions of exact coherent structures in shear flows are discussed. The first type of asymptotic framework to be discussed was introduced in a series of papers by Hall & Smith in the 1990s and was referred to as vortex-wave interaction theory (VWI). New results are given here for the canonical VWI problem in an infinite ...

Fluorescence correlation spectroscopy (FCS) can be used to measure kinetic properties of single molecules in drops of solution or in cells. Here we report on FCS measurements of tetramethylrhodamine (TMR)-dextran (10 kDa) in dendrites of cultured mitral cells of Xenopus laevis tadpoles. To interpret such measurements correctly, the plasma membrane as a boundary of diffusion has to be taken into...

Sequential viewing of two orthogonally related patterns produces an afterimage of the first pattern (Vidyasagar et al, 1999 Nature 399 422-423; Francis and Rothmayer, 2003 Perception and Psychophysics 65 508-522). We investigated how the timing between the first stimulus (a vertical bar grating) and the second stimulus (a horizontal bar grating) affected the visibility of the afterimage (a perc...

The objective of this work was to develop a high fidelity model representative on high frequencies of a FCS with an active-active hydraulic actuation. The performance for step input and frequency response were analyzed, showing to be a model close to a real system and representative even in high frequencies.

Studies often follow individuals until they fail from one of a number of competing failure types. One approach to analyzing such competing risks data involves modeling the cause-specific hazards as functions of baseline covariates. A common issue that arises in this context is missing values in covariates. In this setting, we first establish conditions under which complete case analysis (CCA) i...

In recent years fluorescence correlation spectroscopy (FCS) has become a routine method for determining diffusion coefficients, chemical rate constants, molecular concentrations, fluorescence brightness, triplet state lifetimes, and other molecular parameters. FCS measures the spatial and temporal correlation of individual molecules with themselves and so provides a bridge between classical ens...

In vivo environments are highly crowded and inhomogeneous, which may affect reaction processes in cells. In this study we examined the effects of intracellular crowding and an inhomogeneity on the behavior of in vivo reactions by calculating the spectral dimension (d(s)), which can be translated into the reaction rate function. We compared estimates of anomaly parameters obtained from fluoresce...