نتایج جستجو برای: est ssr markers

تعداد نتایج: 251106  

2011
Mohammad Reza Bakhtiarizadeh Mansour Ebrahimi Esmaeil Ebrahimie

Tandem repeats are found in both coding and non-coding sequences of higher organisms. These sequences can be used in cancer genetics and diagnosis to unravel the genetic basis of tumor formation and progression. In this study, a possible relationship between SSR distributions and lung cancer was studied by comparative analysis of EST-SSRs in normal and lung cancerous tissues. While the EST-SSR ...

2001
Benjamin F. Matthews Thomas E. Devine Jane M. Weisemann Hunter S. Beard Kimberly S. Lewers Margaret H. MacDonald Yong-Bong Park Rama Maiti Jhy-Jhu Lin Jonathan Kuo Monica J. Pedroni Perry B. Cregan James A. Saunders

Association of markers and phenotypes through genetic linkage has focused primarily on two goals: marker The soybean [Glycine max (L.) Merr.] expressed sequence tagged assisted selection and map-based cloning. Marker as(EST) database is growing rapidly and promises to be a valuable resource for discovering agronomically important genes. Genetic sisted selection increases the efficiency of track...

2014
Haibin Wang Xiangyu Qi Ri Gao Jingjing Wang Bin Dong Jiafu Jiang Sumei Chen Zhiyong Guan Weimin Fang Yuan Liao Fadi Chen

Polyploidy is common among flowering plants, including the Asteraceae, a relatively recent angiosperm group. EST-SSRs were used to characterize polymorphism among 29 Chrysanthemum and Ajania spp. accessions of various ploidy levels. Most EST-SSR loci were readily transferable between the species, 29 accessions were separated into three groups in terms of the number of fragments. It inferred tha...

پایان نامه :وزارت علوم، تحقیقات و فناوری - دانشگاه صنعتی اصفهان - دانشکده کشاورزی 1392

استفاده در این پژوهش، 42 نشانگر در بین والدین چندشکلی نشان دادند و برای انجام pcr در بین 105 نتاج f2 استفاده شدند. پس از امتیازدهی نوارها، با استفاده از نرم افزار mapmaker/exp ver3.3 با معیار حداکثر فاصله 50 سانتی مورگان و حداقل lod برابر3 ، پنج گروه پیوستگی تشکیل شد.20 نشانگر est-ssr ، چهار صفت فیزیولوژیک و صفت مورفولوژیک رنگ بذر در نقشه قرار گرفتند.درگروه اول، پنج نشانگر est-ssr ، چهار صفت فی...

Journal: :Agriculture 2022

Morphological and simple sequence repeat (SSR) approaches were used to determine the genetic diversity of 29 ryegrass (Lolium rigidum) genotypes belonging eight populations collected from several regions in Saudi Arabia. In this study, 50 Silico-developed SSR markers derived genomic expressed tag (EST) microsatellites examined. Analysis variance showed highly significant differences all studied...

2013
Zhipeng Liu Tianlong Chen Lichao Ma Zhiguang Zhao Patrick X. Zhao Zhibiao Nan Yanrong Wang

BACKGROUND Alfalfa is the most widely cultivated forage legume and one of the most economically valuable crops in the world. The large size and complexity of the alfalfa genome has delayed the development of genomic resources for alfalfa research. Second-generation Illumina transcriptome sequencing is an efficient method for generating a global transcriptome sequence dataset for gene discovery ...

2011
Yuepeng Han Danman Zheng Sornkanok Vimolmangkang Muhammad A. Khan Jonathan E. Beever Schuyler S. Korban

A total of 355 simple sequence repeat (SSR) markers were developed, based on expressed sequence tag (EST) and bacterial artificial chromosome (BAC)-end sequence databases, and successfully used to construct an SSR-based genetic linkage map of the apple. The consensus linkage map spanned 1143 cM, with an average density of 2.5 cM per marker. Newly developed SSR markers along with 279 SSR markers...

Journal: :The Journal of heredity 2006
Catherine H Pashley Jennifer R Ellis David E McCauley John M Burke

Expressed sequence tag (EST) databases represent a potentially valuable resource for the development of molecular markers for use in evolutionary studies. Because EST-derived markers come from transcribed regions of the genome, they are likely to be conserved across a broader taxonomic range than are other sorts of markers. This paper describes a case study in which the publicly available culti...

Journal: :Genome 2008
B Shaun Bushman Steve R Larson Ivan W Mott Paul F Cliften Richard R-C Wang N Jerry Chatterton Alvaro G Hernandez Shahjahan Ali Ryan W Kim Jyothi Thimmapuram George Gong Lei Liu Mark A Mikel

Triticeae contains hundreds of species of both annual and perennial types. Although substantial genomic tools are available for annual Triticeae cereals such as wheat and barley, the perennial Triticeae lack sufficient genomic resources for genetic mapping or diversity research. To increase the amount of sequence information available in the perennial Triticeae, three expressed sequence tag (ES...

2016
Sakshi Chaudhary Bharat Kumar Mishra Thiruvettai Vivek Santoshkumar Magadum Jeshima Khan Yasin

BACKGROUND Simple Sequence Repeats or microsatellites are resourceful molecular genetic markers. There are only few reports of SSR identification and development in pineapple. Complete genome sequence of pineapple available in the public domain can be used to develop numerous novel SSRs. Therefore, an attempt was made to identify SSRs from genomic, chloroplast, mitochondrial and EST sequences o...

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