The biologically important constituents of the dissolved organic phosphorus (DOP) pool, their bioavailability, and their cycling in coastal systems are still poorly understood. Here we use the enzyme alkaline phosphatase as a metric of DOP bioavailability and track the activity of this enzyme in a coastal system. We observed alkaline phosphatase activity (APA) in the .0.2-mm size fraction of al...

Post-translational modification of proteins with prokaryotic ubiquitin-like protein (Pup) is the bacterial equivalent of ubiquitination in eukaryotes. Mycobacterial pupylation is a two-step process in which the carboxy-terminal glutamine of Pup is first deamidated by Dop (deamidase of Pup) before ligation of the generated γ-carboxylate to substrate lysines by the Pup ligase PafA. In this study,...

We propose a generalization of the supervised DOP model to unsupervised learning. This new model, which we call U-DOP, initially assigns all possible unlabeled binary trees to a set of sentences and next uses all subtrees from (a large subset of) these binary trees to compute the most probable parse trees. We show how U-DOP can be implemented by a PCFG-reduction technique and report competitive...

We suggest approximate penetration models for rigid body penetration that take into account sliding velocity (SV) and pressure dependence of the friction coefficient (FC). It is showed that introducing variable FC in a localized interaction model (LIM) yields a model that belongs to the class of LIM. We developed a general method for determining the depth of penetration (DOP) using the piecewis...

| This paper describes the use of a semi-continuous hidden Markov models for speaker veriication. The system uses a technique for discriminative hidden Markov modelling known as discriminating observation probabilities (DOP). Results are presented for text-dependent experiments on isolated digits from 25 genuine speakers and 84 casual im-poster speakers, recorded over the public telephone netwo...

Data-Oriented Translation (DOT), which is based on Data-Oriented Parsing (DOP), comprises an experience-based approach to translation, where new translations are derived with reference to grammatical analyses of previous translations. Previous DOT experiments [Poutsma, 1998, Poutsma, 2000a, Poutsma, 2000b] were small in scale because important advances in DOP technology were not incorporated in...

In this paper I present ongoing work on the data-oriented parsing (DOP) model. In previous work, DOP was tested on a cleaned-up set of analyzed part-of-speech strings from the Penn Treebank, achieving excellent test results. This left, however, two important questions unanswered: (1) how does DOP perform if tested on unedited data, and (2) how can DOP be used for parsing word strings that conta...

The surface waters of oligotrophic oceans have chronically low phosphate (Pi) concentrations, which renders dissolved organic phosphorus (DOP) an important nutrient source. In the subtropical North Atlantic, cyanobacteria are often numerically dominant, but picoeukaryotes can dominate autotrophic biomass and productivity making them important contributors to the ocean carbon cycle. Despite thei...