نتایج جستجو برای: ancestral state reconstruction

تعداد نتایج: 984857  

2013
LiamJ. Revell

1. Modern phylogenetic comparative biology uses data from the relationships between species (phylogeny) combined with comparative information for phenotypic traits to draw model-based statistical inferences about the evolutionary past. Recent years have seen phylogeny methods for evolutionary inference become central in the study of organic evolution. 2. Here, I present two different graphical ...

Journal: :Evolution; international journal of organic evolution 2006
Christopher M Hofmann Thomas W Cronin Kevin E Omland

Carotenoid-based colors are thought to play an important signaling role in many animal taxa. However, little is known about evolutionary changes in carotenoid coloration, especially among closely related species. We used a phylogenetic perspective to examine carotenoid color changes within New World orioles (genus Icterus). Oriole color was quantitatively measured using reflectance spectrometry...

Journal: :Bulletin of mathematical biology 2017
Lina Herbst Mareike Fischer

One of the main aims in phylogenetics is the estimation of ancestral sequences based on present-day data like, for instance, DNA alignments. One way to estimate the data of the last common ancestor of a given set of species is to first reconstruct a phylogenetic tree with some tree inference method and then to use some method of ancestral state inference based on that tree. One of the best-know...

Journal: :Biological chemistry 2016
Rainer Merkl Reinhard Sterner

Ancestral sequence reconstruction (ASR) is the calculation of ancient protein sequences on the basis of extant ones. It is most powerful in combination with the experimental characterization of the corresponding proteins. Such analyses allow for the study of problems that are otherwise intractable. For example, ASR has been used to characterize ancestral enzymes dating back to the Paleoarchean ...

Journal: :Systematic biology 2009
Conrad L Schoch Gi-Ho Sung Francesc López-Giráldez Jeffrey P Townsend Jolanta Miadlikowska Valérie Hofstetter Barbara Robbertse P Brandon Matheny Frank Kauff Zheng Wang Cécile Gueidan Rachael M Andrie Kristin Trippe Linda M Ciufetti Anja Wynns Emily Fraker Brendan P Hodkinson Gregory Bonito Johannes Z Groenewald Mahdi Arzanlou G Sybren de Hoog Pedro W Crous David Hewitt Donald H Pfister Kristin Peterson Marieka Gryzenhout Michael J Wingfield André Aptroot Sung-Oui Suh Meredith Blackwell David M Hillis Gareth W Griffith Lisa A Castlebury Amy Y Rossman H Thorsten Lumbsch Robert Lücking Burkhard Büdel Alexandra Rauhut Paul Diederich Damien Ertz David M Geiser Kentaro Hosaka Patrik Inderbitzin Jan Kohlmeyer Brigitte Volkmann-Kohlmeyer Lizel Mostert Kerry O'Donnell Harrie Sipman Jack D Rogers Robert A Shoemaker Junta Sugiyama Richard C Summerbell Wendy Untereiner Peter R Johnston Soili Stenroos Alga Zuccaro Paul S Dyer Peter D Crittenden Mariette S Cole Karen Hansen James M Trappe Rebecca Yahr François Lutzoni Joseph W Spatafora

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of Fungi. This analysis is the most taxonomically complete to date with species sampled from all 15 currently circumscribed classes. A number of superclass-level nodes that have previously evaded resolution and were unnamed in classifications of the Fungi are resolved for the first time. Based on the...

2013
Nicholas C. Butzin Pascal Lapierre Anna G. Green Kristen S. Swithers J. Peter Gogarten Kenneth M. Noll

The bacterial genomes of Thermotoga species show evidence of significant interdomain horizontal gene transfer from the Archaea. Members of this genus acquired many genes from the Thermococcales, which grow at higher temperatures than Thermotoga species. In order to study the functional history of an interdomain horizontally acquired gene we used ancestral sequence reconstruction to examine the ...

Journal: :Diversity 2023

In this paper, we report on the discovery of hidden biodiversity genus Dendronotus (Gastropoda: Nudibranchia) in bathyal areas North Pacific (the Sea Okhotsk and Kuril Islands). We also test different scenarios expansion to deeper waters. An integrative analysis was implemented based morphological data (light microscopy SEM) molecular data, which included phylogenetic four markers (COI, 16S, H3...

Journal: :the archives of bone and joint surgery 0
amir ata rahnemai-azar university of pittsburgh medical center, pennsylvania, usa soheil sabzevari university of pittsburgh medical center, pennsylvania, usa sebastián irarrázaval university of pittsburgh medical center, pennsylvania, usa tom chao university of pittsburgh medical center, pennsylvania, usa freddie fu university of pittsburgh medical center, pennsylvania, usa

anterior cruciate ligament (acl) reconstruction surgery has significantly evolved in recent years. this has led to development of new technologies that facilitate the diagnosis of acl injury and the application of state of the art methods for treatment. in particular, individualized anatomical acl reconstruction aims to restore native acl function. treatment is tailored to each patient based on...

2011
Jakub Kovác Brona Brejová Tomás Vinar

Genome rearrangements are a valuable source of information about early evolution, as well as an important factor in speciation processes. Reconstruction of ancestral gene orders on a phylogeny is thus one of the crucial tools contributing to understanding of evolution of genome organization. For most models of evolution, this problem is NP-hard. We have developed a universal method for reconstr...

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