نتایج جستجو برای: نشانگر est ssr

تعداد نتایج: 41992  

2015
Miyako Sato Yoichi Hasegawa Kentaro Mishima Katsuhiko Takata

UNLABELLED • PREMISE OF THE STUDY Expressed sequence tag-simple sequence repeat (EST-SSR) markers were developed from Thujopsis dolabrata var. hondae (Cupressaceae) using Illumina sequencing to investigate the genetic diversity and population structure of the genus Thujopsis. • METHODS AND RESULTS Twenty-two primer pairs were developed from ESTs of T. dolabrata var. hondae. The primers ampl...

2017
Zhigang Wu Jinwei Wu Yalin Wang Hongwei Hou

PREMISE OF THE STUDY Microsatellite or simple sequence repeat (SSR) markers were developed to investigate the influence of ecological factors on gene flow and spatial genetic structuring of the submerged plant Ranunculus bungei (Ranunculaceae), which is regarded as an important species for understanding how plants adapt to an aquatic environment. METHODS AND RESULTS Twenty-two microsatellite ...

Journal: :American journal of botany 2012
Sheng-Chun Xu Ya-Ming Gong Wei-Hua Mao Qi-Zan Hu Gu-Wen Zhang Wan Fu Qiang-Qiang Xian

PREMISE OF THE STUDY Expressed sequence tag (EST)-derived simple sequence repeat (SSR) markers were developed in Pisum sativum for further use in genetic studies and breeding programs. METHODS AND RESULTS Forty-one novel EST-SSR primers were developed and characterized for size polymorphism in 32 Pisum sativum individuals from four populations from China. In each population, the number of all...

Journal: :Genome 2006
M L Wang J A Mosjidis J B Morris R E Dean T M Jenkins G A Pederson

The genetic diversity of the genus Crotalaria is unknown even though many species in this genus are economically valuable. We report the first study in which polymorphic expressed sequence tag-simple sequence repeat (EST-SSR) markers derived from Medicago and soybean were used to assess the genetic diversity of the Crotalaria germplasm collection. This collection consisted of 26 accessions repr...

2004
Samina N. Qureshi Sukumar Saha Ramesh V. Kantety J. N. Jenkins S. N. Qureshi

S. N. Qureshi, Department of Plant and Soil Science, P.O. Box 9555, Mississippi State University, Mississippi State, MS 39762; S. Saha and J. N. Jenkins, USDA-ARS, Crop Science Research Laboratory, P.O. Box 5367, Mississippi State, MS 39762; Ramesh V. Kantety, Department of Crop & Soil Sciences, 726 Bradfield Hall, Cornell University, Ithaca, NY 14853 * Corresponding author: [email protected]...

2012
Mathilde Allegre Xavier Argout Michel Boccara Olivier Fouet Yolande Roguet Aurélie Bérard Jean Marc Thévenin Aurélie Chauveau Ronan Rivallan Didier Clement Brigitte Courtois Karina Gramacho Anne Boland-Augé Mathias Tahi Pathmanathan Umaharan Dominique Brunel Claire Lanaud

Theobroma cacao is an economically important tree of several tropical countries. Its genetic improvement is essential to provide protection against major diseases and improve chocolate quality. We discovered and mapped new expressed sequence tag-single nucleotide polymorphism (EST-SNP) and simple sequence repeat (SSR) markers and constructed a high-density genetic map. By screening 149 650 ESTs...

2014
Bing-Bing Liu Bin Tian Hui Ma Zhi-Qiang Lu Qiang Qiu Kang-Shan Mao Jian-Quan Liu

UNLABELLED PREMISE OF THE STUDY A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next-generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae). • METHODS AND RESULTS A total of 38 high-quality simple sequence repeat (SSR) primers were identified, of which 15 could be successfully amplified. Subsequently, we selected 8...

Journal: :Genetics and molecular research : GMR 2013
Z W An Y C Li Q L Zhai L L Xie Y H Zhao H S Huang

Cultivated clones of Hevea brasiliensis have a narrow genetic base. In order to broaden the genetic base, it is first necessary to investigate the genetic diversity of wild populations. Expressed sequence tag-simple sequence repeat (EST-SSR) markers were developed to investigate the genetic diversity of Hevea populations. Four hundred and thirty microsatellites were identified and 148 primers w...

Journal: :Genome 2006
G P Gill P L Wilcox D J Whittaker R A Winz P Bickerstaff C E Echt J Kent M O Humphreys K M Elborough R C Gardner

A moderate-density linkage map for Lolium perenne L. has been constructed based on 376 simple sequence repeat (SSR) markers. Approximately one third (124) of the SSR markers were developed from GeneThresher libraries that preferentially select genomic DNA clones from the gene-rich unmethylated portion of the genome. The remaining SSR marker loci were generated from either SSR-enriched genomic l...

ژورنال: :علوم گیاهان زراعی ایران 2011
نرجس طبخ کار بابک ربیعی عاطفه صبوری

در این تحقیق، فراوانی آللی و چندشکلی 27 نشانگر ریزماهواره پیوسته با مکان های ژنی کنترل کننده کیفیت دانه در بین 47 رقم برنج متعلق به چهار گروه متفاوت شامل 21 رقم بومی ایرانی، 16 رقم اصلاح شده، 7 رقم irri و 3 رقم آپلند مورد ارزیابی قرار گرفت. میانگین شاخص اطلاعات چندشکل (pic) و شاخص تنوع شانن به ترتیب برابر با 54/0 و 14/1 به دست آمد. بیشترین تعداد آلل های چندشکل، pic و شاخص شانن در کل جمعیت مربوط...

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