Professors McShane and Wyner have written a thought-provoking paper that intends to challenge some of the conventional wisdom in the paleoclimate literature. Rather than commenting on the merits of the entire methodology we focus on one topic. Namely, we discuss theoretical and practical aspects of the use of the least absolute shrinkage and selection operator [Tibshirani (1996)], more popularl...

We consider the linear regression problem. We propose the S-Lasso procedure to estimate the unknown regression parameters. This estimator enjoys sparsity of the representation while taking into account correlation between successive covariates (or predictors). The study covers the case when p ≫ n, i.e. the number of covariates is much larger than the number of observations. In the theoretical p...

Both canonical and alternative splicing of RNAs are governed by intronic sequence elements and produce transient lariat structures fastened by branch points within introns. To map precisely the location of branch points on a genomic scale, we developed LaSSO (Lariat Sequence Site Origin), a data-driven algorithm which utilizes RNA-seq data. Using fission yeast cells lacking the debranching enzy...

Lasso proved to be an extremely successful technique for simultaneous estimation and variable selection. However lasso has two major drawbacks. First, it does not capture any grouping effect and secondly in some situations lasso solutions are inconsistent. To overcome inconsistency recently adaptive lasso was proposed where adaptive weights are used for penalizing different coefficients. Adapti...

Despite the widespread use of liver transplantation as a routine therapy in liver diseases, the effective factors on its outcomes are still controversial. This study attempted to identify the most effective factors on death after liver transplantation. For this purpose, modified least absolute shrinkage and selection operator (LASSO), called Adaptive LASSO, was utilized. One of the best advanta...

Variable selection in genome-wide association studies can be a daunting task and statistically challenging because there are more variables than subjects. We propose an approach that uses principal-component analysis (PCA) and least absolute shrinkage and selection operator (LASSO) to identify gene-gene interaction in genome-wide association studies. A PCA was used to first reduce the dimension...

We propose a new algorithm, DASSO, for fitting the entire coefficient path of the Dantzig selector with a similar computational cost to the LARS algorithm that is used to compute the Lasso. DASSO efficiently constructs a piecewise linear path through a sequential simplex-like algorithm, which is remarkably similar to LARS. Comparison of the two algorithms sheds new light on the question of how ...

BACKGROUND Blindness due to diabetic retinopathy (DR) is the major disability in diabetic patients. Although early management has shown to prevent vision loss, diabetic patients have a low rate of routine ophthalmologic examination. Hence, we developed and validated sparse learning models with the aim of identifying the risk of DR in diabetic patients. METHODS Health records from the Korea Na...

We have developed a novel class of antisense agents, RNA Lassos, which are capable of binding to and circularizing around complementary target RNAs. The RNA Lasso consists of a fixed sequence derived from the hairpin ribozyme and an antisense segment whose size and sequence can be varied to base pair with accessible sites in the target RNA. The ribozyme catalyzes self-processing of the 5'- and ...

In this paper, we introduce Adaptive Cluster Lasso(ACL) method for variable selection in high dimensional sparse regression models with strongly correlated variables. To handle correlated variables, the concept of clustering or grouping variables and then pursuing model fitting is widely accepted. When the dimension is very high, finding an appropriate group structure is as difficult as the ori...