نتایج جستجو برای: ffpe blocks

تعداد نتایج: 79117  

Journal: :Annals of oncology : official journal of the European Society for Medical Oncology 2012
K Goto M Satouchi G Ishii K Nishio K Hagiwara T Mitsudomi J Whiteley E Donald R McCormack T Todo

BACKGROUND Epidermal growth factor receptor (EGFR) mutation is predictive for the efficacy of EGFR tyrosine kinase inhibitors in advanced non-small-cell lung cancer (NSCLC) treatment. We evaluated the performance, sensitivity, and concordance between five EGFR tests. MATERIALS AND METHODS DNA admixtures (n = 34; 1%-50% mutant plasmid DNA) and samples from NSCLC patients [116 formalin-fixed pa...

2017
Marius Ilie Catherine Butori Sandra Lassalle Simon Heeke Nicolas Piton Jean-Christophe Sabourin Virginie Tanga Kevin Washetine Elodie Long-Mira Priscilla Maitre Nathalie Yazbeck Olivier Bordone Virginie Lespinet Sylvie Leroy Charlotte Cohen Jérôme Mouroux Charles Hugo Marquette Véronique Hofman Paul Hofman

Treatment with EGFR inhibitors is limited to patients with advanced/metastatic non-small cell lung cancer who have known EGFR mutations. Currently, patient care has to respond to several imperatives to make these inhibitors broadly available to all patients; fast and accurate detection of EGFR mutations by a sensitive and specific standardized cost-effective method, easy-to-implement in setting...

Journal: :PloS one 2016
Aruna Korlimarla Jyothi S Prabhu Jose Remacle Savitha Rajarajan Uma Raja Anupama C E B S Srinath Suraj Manjunath Gopinath K S Marjorrie Correa Prasad M S N T S Sridhar

PURPOSE Apart from germ-line BRCA1-mutated breast cancers, a significant proportion of women with sporadic triple negative breast cancer (TNBC) sub-type are known to harbour varying levels of BRCA1-dysfuction. There is currently no established diagnostic method to identify these patients. METHODS The analysis was performed on 183 primary breast cancer tumor specimens from our longitudinal cas...

2014
B Babouee Flury M Weisser S Savič Prince L Bubendorf M Battegay R Frei D Goldenberger

BACKGROUND Detection of fungal DNA from formalin-fixed, paraffin-embedded (FFPE) tissue is challenging due to degradation of DNA and presence of PCR inhibitors in these samples. We analyzed FFPE samples of 26 patients by panfungal PCR and compared the results to the composite diagnosis according to the European Organization for Research and Treatment of Cancer (EORTC) criteria. Additionally we ...

2012
Tara Holley Elizabeth Lenkiewicz Lisa Evers Waibhav Tembe Christian Ruiz Joel R. Gsponer Cyrill A. Rentsch Lukas Bubendorf Mark Stapleton Doug Amorese Christophe Legendre Heather E. Cunliffe Ann E. McCullough Barbara Pockaj David Craig John Carpten Daniel Von Hoff Christine Iacobuzio-Donahue Michael T. Barrett

Formalin fixed paraffin embedded (FFPE) tissues are a vast resource of annotated clinical samples. As such, they represent highly desirable and informative materials for the application of high definition genomics for improved patient management and to advance the development of personalized therapeutics. However, a limitation of FFPE tissues is the variable quality of DNA extracted for analyse...

Journal: :Journal of proteomics 2012
Omid Azimzadeh Harry Scherthan Ramesh Yentrapalli Zarko Barjaktarovic Marius Ueffing Marcus Conrad Frauke Neff Julia Calzada-Wack Michaela Aubele Christian Buske Michael J Atkinson Stefanie M Hauck Soile Tapio

Qualitative proteome profiling of formalin-fixed, paraffin-embedded (FFPE) tissue is advancing the field of clinical proteomics. However, quantitative proteome analysis of FFPE tissue is hampered by the lack of an efficient labelling method. The usage of conventional protein labelling on FFPE tissue has turned out to be inefficient. Classical labelling targets lysine residues that are blocked b...

Journal: :Journal of clinical pathology 2011
Ellen Berget Lars Helgeland Anders Molven Olav Karsten Vintermyr

AIMS The BIOMED-2 multiplex PCR protocol is a commonly used procedure for assessing B cell clonality in lymphoma diagnostics. Follicular lymphoma poses a special challenge for PCR-based analyses because of high prevalence of somatic hypermutations in the rearranged immunoglobulin (IG) domains. This study aimed to evaluate the BIOMED-2 protocol performance in detection of B cell clonality in fol...

2016
Kenji Amemiya Yosuke Hirotsu Taichiro Goto Hiroshi Nakagomi Hitoshi Mochizuki Toshio Oyama Masao Omata

Identifying genetic alterations in tumors is critical for molecular targeting of therapy. In the clinical setting, formalin-fixed paraffin-embedded (FFPE) tissue is usually employed for genetic analysis. However, DNA extracted from FFPE tissue is often not suitable for analysis because of its low levels and poor quality. Additionally, FFPE sample preparation is time-consuming. To provide early ...

2017
Maximilian Bonta Szilvia Török Balazs Hegedus Balazs Döme Andreas Limbeck

Laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) is one of the most commonly applied methods for lateral trace element distribution analysis in medical studies. Many improvements of the technique regarding quantification and achievable lateral resolution have been achieved in the last years. Nevertheless, sample preparation is also of major importance and the optimal samp...

Journal: :Physical review. E, Statistical, nonlinear, and soft matter physics 2001
E Barkai

Recently, Metzler et al. [Phys. Rev. Lett. 82, 3563 (1999)], introduced a fractional Fokker-Planck equation (FFPE) describing a subdiffusive behavior of a particle under the combined influence of external nonlinear force field, and a Boltzmann thermal heat bath. In this paper we present the solution of the FFPE in terms of an integral transformation. The transformation maps the solution of ordi...

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