نتایج جستجو برای: exome

تعداد نتایج: 8594  

Journal: :Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2013
Melissa S DeRycke Shanaka R Gunawardena Sumit Middha Yan W Asmann Daniel J Schaid Shannon K McDonnell Shaun M Riska Bruce W Eckloff Julie M Cunningham Brooke L Fridley Daniel J Serie William R Bamlet Mine S Cicek Mark A Jenkins David J Duggan Daniel Buchanan Mark Clendenning Robert W Haile Michael O Woods Steven N Gallinger Graham Casey John D Potter Polly A Newcomb Loïc Le Marchand Noralane M Lindor Stephen N Thibodeau Ellen L Goode

BACKGROUND Colorectal cancer (CRC) in densely affected families without Lynch Syndrome may be due to mutations in undiscovered genetic loci. Familial linkage analyses have yielded disparate results; the use of exome sequencing in coding regions may identify novel segregating variants. METHODS We completed exome sequencing on 40 affected cases from 16 multicase pedigrees to identify novel loci...

Journal: :The New England journal of medicine 2013
Yaping Yang Donna M Muzny Jeffrey G Reid Matthew N Bainbridge Alecia Willis Patricia A Ward Alicia Braxton Joke Beuten Fan Xia Zhiyv Niu Matthew Hardison Richard Person Mir Reza Bekheirnia Magalie S Leduc Amelia Kirby Peter Pham Jennifer Scull Min Wang Yan Ding Sharon E Plon James R Lupski Arthur L Beaudet Richard A Gibbs Christine M Eng

BACKGROUND Whole-exome sequencing is a diagnostic approach for the identification of molecular defects in patients with suspected genetic disorders. METHODS We developed technical, bioinformatic, interpretive, and validation pipelines for whole-exome sequencing in a certified clinical laboratory to identify sequence variants underlying disease phenotypes in patients. RESULTS We present data...

Journal: :Human mutation 2010
Emilie Lalonde Steffen Albrecht Kevin C H Ha Karine Jacob Nathalie Bolduc Constantin Polychronakos Pierre Dechelotte Jacek Majewski Nada Jabado

Protein coding genes constitute approximately 1% of the human genome but harbor 85% of the mutations with large effects on disease-related traits. Therefore, efficient strategies for selectively sequencing complete coding regions (i.e., "whole exome") have the potential to contribute our understanding of human diseases. We used a method for whole-exome sequencing coupling Agilent whole-exome ca...

2016
Samira Asgari Paul J. McLaren Jane Peake Melanie Wong Richard Wong Istvan Bartha Joshua R. Francis Katia Abarca Kyra A. Gelderman Philipp Agyeman Christoph Aebi Christoph Berger Jacques Fellay Luregn J. Schlapbach Klara Posfay-Barbe Eric Giannoni Christoph Aebi Philipp Agyeman Bendicht P. Wagner Luregn J. Schlapbach Ulrich Heininger Gabriel Konetzny Alex Donas Martin Stocker Antonio Leone Paul Hasters Anita Niederer-Loher Christian Kahlert Walter Baer Christa Relly Christoph Berger

One out of three pediatric sepsis deaths in high income countries occur in previously healthy children. Primary immunodeficiencies (PIDs) have been postulated to underlie fulminant sepsis, but this concept remains to be confirmed in clinical practice. Pseudomonas aeruginosa (P. aeruginosa) is a common bacterium mostly associated with health care-related infections in immunocompromised individua...

Journal: :Human molecular genetics 2016
A L Richards G Leonenko J T Walters D H Kavanagh E G Rees A Evans K D Chambert J L Moran J Goldstein B M Neale S A McCarroll A J Pocklington P A Holmans M J Owen M C O'Donovan

Schizophrenia is a highly heritable disorder. Genome-wide association studies based largely on common alleles have identified over 100 schizophrenia risk loci, but it is also evident from studies of copy number variants (CNVs) and from exome-sequencing studies that rare alleles are also involved. Full characterization of the contribution of rare alleles to the disorder awaits the deployment of ...

2016
Jonatan Halvardson Jin J Zhao Ammar Zaghlool Christian Wentzel Patrik Georgii-Hemming Else Månsson Helena Ederth Sävmarker Göran Brandberg Cecilia Soussi Zander Ann-Charlotte Thuresson Lars Feuk

BACKGROUND De novo mutations are a frequent cause of disorders related to brain development. We report the results of screening patients diagnosed with both epilepsy and intellectual disability (ID) using exome sequencing to identify known and new causative de novo mutations relevant to these conditions. METHODS Exome sequencing was performed on 39 patient-parent trios to identify de novo mut...

Journal: :Circulation. Cardiovascular genetics 2014
Lisa J Martin Valentina Pilipenko Kenneth M Kaufman Linda Cripe Leah C Kottyan Mehdi Keddache Phillip Dexheimer Matthew T Weirauch D Woodrow Benson

BACKGROUND Bicuspid aortic valve (BAV) is the most common congenital cardiovascular malformation. Although highly heritable, few causal variants have been identified. The purpose of this study was to identify genetic variants underlying BAV by whole exome sequencing a multiplex BAV kindred. METHODS AND RESULTS Whole exome sequencing was performed on 17 individuals from a single family (BAV=3;...

2016
Maho Oishi Akio Oishi Norimoto Gotoh Ken Ogino Koichiro Higasa Kei Iida Yukiko Makiyama Satoshi Morooka Fumihiko Matsuda Nagahisa Yoshimura

PURPOSE To investigate the efficacy of targeted exome sequencing for mutational screening of Japanese patients with cone dystrophy (CD) or cone-rod dystrophy (CRD). METHODS DNA samples from 43 Japanese patients with CD or CRD were sequenced using an exome-sequencing panel targeting all 193 known inherited eye disease genes and next-generation sequencing methodologies. Subsequently, candidate ...

2013
Jonatan Halvardson Ammar Zaghlool Lars Feuk

RNA sequencing has become an important method to perform hypothesis-free characterization of global gene expression. One of the limitations of RNA sequencing is that most sequence reads represent highly expressed transcripts, whereas low level transcripts are challenging to detect. To combine the benefits of traditional expression arrays with the advantages of RNA sequencing, we have used whole...

Journal: :Circulation. Cardiovascular genetics 2017
Sara B Seidelmann Emily Smith Lakshman Subrahmanyan Daniel Dykas Maen D Abou Ziki Bani Azari Fady Hannah-Shmouni Yuexin Jiang Joseph G Akar Mark Marieb Daniel Jacoby Allen E Bale Richard P Lifton Arya Mani

BACKGROUND With the advent of high throughput sequencing, the identification of genetic causes of cardiovascular disease (CVD) has become an integral part of medical diagnosis and management and at the forefront of personalized medicine in this field. The use of whole exome sequencing for clinical diagnosis, risk stratification, and management of inherited CVD has not been previously evaluated....

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