نتایج جستجو برای: est ssr markers

تعداد نتایج: 251106  

2013
Haibin Wang Jiafu Jiang Sumei Chen Xiangyu Qi Hui Peng Pirui Li Aiping Song Zhiyong Guan Weimin Fang Yuan Liao Fadi Chen

BACKGROUND Simple sequence repeats (SSRs) are ubiquitous in eukaryotic genomes. Chrysanthemum is one of the largest genera in the Asteraceae family. Only few Chrysanthemum expressed sequence tag (EST) sequences have been acquired to date, so the number of available EST-SSR markers is very low. METHODOLOGY/PRINCIPAL FINDINGS Illumina paired-end sequencing technology produced over 53 million se...

2011
Martín García Pamela Villalba Cintia Acuña Javier Oberschelp Leonel Harrand Mauro Surenciski María Martínez César Petroli Carolina Sansaloni Danielle Faria Dario Grattapaglia Susana Marcucci Poltri

Background Eucalypts are the most widely planted hardwood trees in the world, occupying globally more than 18 million hectares, as an important source of carbon neutral renewable energy and raw material for pulp, paper and solid wood. Intensive planting programs of Eucalyptus grandis have been carried out in the Argentinian Mesopotamia. Linkage maps are useful tools for quantitative trait loci ...

2011
Kenta Shirasawa Maki Oyama Hideki Hirakawa Shusei Sato Satoshi Tabata Takashi Fujioka Chiaki Kimizuka-Takagi Shigemi Sasamoto Akiko Watanabe Midori Kato Yoshie Kishida Mitsuyo Kohara Chika Takahashi Hisano Tsuruoka Tsuyuko Wada Takako Sakai Sachiko Isobe

Raphanus sativus (2n = 2x = 18) is a widely cultivated member of the family Brassicaceae, for which genomic resources are available only to a limited extent in comparison to many other members of the family. To promote more genetic and genomic studies and to enhance breeding programmes of R. sativus, we have prepared genetic resources such as complementary DNA libraries, expressed sequences tag...

2011
Eline van Zijll de Jong Kathryn M. Guthridge German C. Spangenberg John W. Forster

Fungal species of the Neotyphodium and Epichloë genera are endophytes of pasture grasses showing complex differences of life-cycle and genetic architecture. Simple sequence repeat (SSR) markers have been developed from endophyte-derived expressed sequence tag (EST) collections. Although SSR array size polymorphisms are appropriate for phenetic analysis to distinguish between taxa, the capacity ...

Journal: :The Journal of heredity 2012
Vincent P Buonaccorsi Carol A Kimbrell Eric A Lynn John R Hyde

Comparative population genetic analyses of traditional and emergent molecular markers aid in determining appropriate use of new technologies. The bocaccio rockfish Sebastes paucispinis is a high gene-flow marine species off the west coast of North America that experienced strong population decline over the past 3 decades. We used 18 anonymous and 13 gene-associated simple sequence repeat (SSR) ...

2015
Liwu Zhang Yanru Li Aifen Tao Pingping Fang Jianmin Qi Tapan Kumar Mondal

Jute, comprising white and dark jute, is the second important natural fiber crop after cotton worldwide. However, the lack of expressed sequence tag-derived simple sequence repeat (EST-SSR) markers has resulted in a large gap in the improvement of jute. Previously, de novo 48,914 unigenes from white jute were assembled. In this study, 1,906 EST-SSRs were identified from these assembled uingenes...

Journal: :Genetics and molecular research : GMR 2015
C A Nogueira N B Stafuzza T P Ribeiro A D L Prado I P P Menezes N Peixoto P J Gonçalves L M Almeida

Hancornia speciosa, popularly known as mangabeira, is a fruit tree native to the Brazilian Cerrado that shows great economic potential, due to its multiple uses. Intraspecific classification of this species is difficult because it shows high morphological diversity. An early study of the species reported that there are six botanic varieties that differ morphologically mainly in the shapes of th...

2011
Nirala Ramchiary Van Dan Nguyen Xiaonan Li Chang Pyo Hong Vignesh Dhandapani Su Ryun Choi Ge Yu Zhong Yun Piao Yong Pyo Lim

Genic microsatellite markers, also known as functional markers, are preferred over anonymous markers as they reveal the variation in transcribed genes among individuals. In this study, we developed a total of 707 expressed sequence tag-derived simple sequence repeat markers (EST-SSRs) and used for development of a high-density integrated map using four individual mapping populations of B. rapa....

2016
Haibin Wu Xiaoli He Hao Gong Shaobo Luo Mingzhu Li Junqiu Chen Changyuan Zhang Ting Yu Wangping Huang Jianning Luo

The hybrids between Luffa acutangula (L.) Roxb. and L.cylindrica (L.) Roem. have strong heterosis effects. However, some reproductive isolation traits hindered their normal hybridization and fructification, which was mainly caused by the flowering time and hybrid pollen sterility. In order to study the genetic basis of two interspecific reproductive isolation traits, we constructed a genetic li...

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