نتایج جستجو برای: codon usage bias

تعداد نتایج: 222798  

Journal: :Journal of evolutionary biology 2006
N Bierne A Eyre-Walker

A strong negative correlation between the rate of amino-acid substitution and codon usage bias in Drosophila has been attributed to interference between positive selection at nonsynonymous sites and weak selection on codon usage. To further explore this possibility we have investigated polymorphism and divergence at three kinds of sites: synonymous, nonsynonymous and intronic in relation to cod...

Journal: :Nature Reviews Molecular Cell Biology 2017

2014
Shivapriya Chithambaram Ramanandan Prabhakaran Xuhua Xia

Because phages use their host translation machinery, their codon usage should evolve toward that of highly expressed host genes. We used two indices to measure codon adaptation of phages to their host, rRSCU (the correlation in relative synonymous codon usage [RSCU] between phages and their host) and Codon Adaptation Index (CAI) computed with highly expressed host genes as the reference set (be...

Journal: :Molecular biology and evolution 2018
N Galtier C Roux M Rousselle J Romiguier E Figuet S Glémin N Bierne L Duret

Selection on codon usage bias is well documented in a number of microorganisms. Whether codon usage is also generally shaped by natural selection in large organisms, despite their relatively small effective population size (Ne), is unclear. In animals, the population genetics of codon usage bias has only been studied in a handful of model organisms so far, and can be affected by confounding, no...

Journal: :Journal of Bioinformatics and Sequence Analysis 2018

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