نتایج جستجو برای: codon usage

تعداد نتایج: 114780  

Journal: :Genetics and Molecular Research 2014

2003
Haruo Suzuki Rintaro Saito Masaru Tomita

It has become clear that in most bacterial species there is considerable heterogeneity in codon usage among genes, and the codon usage of any gene is thought to reflect a balance between the forces of mutation, selection, and random genetic drift [4]. The strength and direction of these forces vary for different species, depending on their lifestyles [1]. In this study, we investigated the leve...

Journal: :Journal of computational biology : a journal of computational molecular cell biology 2009
Ming-Wei Su Hsiu-Man Lin Hanna S. Yuan Woei-Chyn Chu

Viruses have to exploit host transcription and translation mechanisms to replicate in a hostile host cellular environment, and therefore, it is likely that the infected host may impose pressure on viral evolution. In this study, we investigated differences in codon usage preferences among the highly mutable single strain RNA viruses which infect vertebrate or invertebrate hosts, respectively. W...

2016
Eneko Villanueva Maria Martí-Solano Cristina Fillat

Codon usage adaptation of lytic viruses to their hosts is determinant for viral fitness. In this work, we analyzed the codon usage of adenoviral proteins by principal component analysis and assessed their codon adaptation to the host. We observed a general clustering of adenoviral proteins according to their function. However, there was a significant variation in the codon preference between th...

Journal: :Molecular Phylogenetics and Evolution 2019

Journal: :Human Molecular Genetics 2016

Journal: :Proceedings of the National Academy of Sciences 2018

2016
Lauro Velazquez-Salinas Selene Zarate Michael Eschbaumer Francisco Pereira Lobo Douglas P. Gladue Jonathan Arzt Isabel S. Novella Luis L. Rodriguez

Arboviruses (arthropod borne viruses) have life cycles that include both vertebrate and invertebrate hosts with substantial differences in vector and host specificity between different viruses. Most arboviruses utilize RNA for their genetic material and are completely dependent on host tRNAs for their translation, suggesting that virus codon usage could be a target for selection. In the current...

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