Summary An R package for performing number and brightness image analysis, with the implementation of a novel automatic detrending algorithm. Availability and implementation Available at https://github.com/rorynolan/nandb for all platforms. Contact [email protected] or [email protected]. Supplementary information Supplementary data are available at Bioinformatics online.

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 Complex Systems . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 Recurrence Quantification Analysis . . . . . . . . . . . . . . . . . . . . . ...

The paper describes several data mining techniques, developed to solve problems which are faced by biologists in Bioinformatics.Several biclustering algorithms which perform clustering on the two dimensions simultaneously are described. Other techniques described in this paper include feature selection methods which help in reducing noise and improving the performance of the classification model.

Innovative DNA sequencers, relying on pyrosequencing, are now being produced, which cut down costs and speed up sequencing by an order of magnitude. Hence the capability of handling high throughput sequencing is becoming increasingly important for Bioinformatics. This study concerns the development of a high performance pipeline for analyzing cDNA sequences produced by a high throughput pyroseq...

In this paper we propose a new implementation of EasyCluster, a robust software developed to generate reliable clusters by expressed sequence tags (EST). Such clusters can be used to infer and improve gene structures as well as discover potential alternative splicing events. The new version of EasyCluster software is able to manage genome scale transcriptome data produced by massive sequencing ...

We study the problem of finding occurrences of motifs in vertex-colored graphs, where a motif is a multiset of colors, and an occurrence of a motif is a subset of connected vertices with a bijection between its colors and the colors of the motif. This problem has applications in metabolic network analysis, an important area in bioinformatics. We give two positive results and three negative resu...

Analysis of Missense Mutations CX3CR1 Gene in Patients with Recurrent Pregnancy Loss Using Bioinformatics Tools

Bioinformatics derives knowledge from computer analysis of biological data. These can consist of the information stored in the genetic code, but also experimental results from various sources, patient statistics, and scientific literature. Research in bioinformatics includes method development for storage, retrieval, and analysis of the data. Bioinformatics is a rapidly developing branch of bio...