OF THE DISSERTATION Stochastic Modeling of Advection-Diffusion-Reaction Processes in Biological Systems

We consider absorbing chemical reactions in a fluid flow modeled by the coupled advection-reaction-diffusion equations. In these systems, interplay between diffusion and transportation causes enhanced dissipation phenomenon. show that time scale, together with reaction coupling strength, determines characteristic scale of reaction.

We study pattern-forming instabilities in reaction-advection-diffusion systems. We develop an approach based on Lyapunov-Bloch exponents to figure out the impact of a spatially periodic mixing flow on the stability of a spatially homogeneous state. We deal with the flows periodic in space that may have arbitrary time dependence. We propose a discrete in time model, where reaction, advection, an...

A comprehensive study is presented regarding the stability of the forward explicit integration technique with generalized finite difference spatial discretizations, free of numerical diffusion, applied to the advection-diffusion equation. The modified equivalent partial differential equation approach is used to demonstrate that the approximation is free of numerical diffusion. Two-dimensional r...

We design a perfectly matched layer for the advection-diffusion equation. We show that the reflection coefficient is exponentially small with respect to the damping parameter and the width of the PML and this independently of the advection and of the viscosity. Numerical tests assess the efficiency of the approach.

We design, analyse and implement an arbitrary order scheme applicable to generic meshes for a coupled elliptic-parabolic PDE system describing miscible displacement in porous media. The discretisation is based on several adaptations of the Hybrid-High-Order (HHO) method due to Di Pietro et al. [Computational Methods in Applied Mathematics, 14(4), (2014)]. The equation governing the pressure is ...

In this paper, approaches to the numerical recovering of initial condition in inverse problem for a nonlinear singularly perturbed reaction–diffusion–advection equation are considered. The feature formulation is use additional information about value solution at known position reaction front, measured experimentally with delay relative moment time. case, problem, gradient method minimizing cost...

Abstarct: Advection-diffusion equation with constant and variable coefficients has a wide range of practical and industrial applications. Due to the importance of advection-diffusion equation the present paper, solves and analyzes these problems using a new finite difference equation as well as a numerical scheme. The developed scheme is based on a mathematical combination between Siemieniuch a...

We develop an optimization-based approach for additive decomposition and reconnection of algebraic problems arising from discretization of partial differential equations (PDEs). Application to a scalar advection-diffusion PDE illustrates the new approach. In particular, we obtain a robust iterative solver for advection-dominated problems using standard multi-level solvers for the Poisson equation.