نتایج جستجو برای: short tandem repeats strs

تعداد نتایج: 491918  

2017
Adam Ciesiolka Magdalena Jazurek Karolina Drazkowska Wlodzimierz J. Krzyzosiak

Short Tandem Repeats (STRs) are frequent entities in many transcripts, however, in some cases, pathological events occur when a critical repeat length is reached. This phenomenon is observed in various neurological disorders, such as myotonic dystrophy type 1 (DM1), fragile X-associated tremor/ataxia syndrome, C9orf72-related amyotrophic lateral sclerosis and frontotemporal dementia (C9ALS/FTD)...

2012
Chun-Tien Chang Chi-Neu Tsai Chuan Yi Tang Chun-Houh Chen Jang-Hau Lian Chi-Yu Hu Chia-Lung Tsai Angel Chao Chyong-Huey Lai Tzu-Hao Wang Yun-Shien Lee

The direct sequencing of PCR products generates heterozygous base-calling fluorescence chromatograms that are useful for identifying single-nucleotide polymorphisms (SNPs), insertion-deletions (indels), short tandem repeats (STRs), and paralogous genes. Indels and STRs can be easily detected using the currently available Indelligent or ShiftDetector programs, which do not search reference seque...

Journal: :Croatian medical journal 2001
W Parson H Niederstätter S Köchl M Steinlechner B Berger

Y-chromosomal short tandem repeats (Y-STRs) are useful forensic DNA markers in investigation of sexual assault cases when a mixture of male and female DNA (e.g., in vaginal swabs) is present in a sample, especially when DNA of the male contributor is present only in very small amount compared to the DNA of the female victim. With autosomal STR analysis of male and female DNA, male DNA in mixtur...

2015
Pille Hallast Chiara Batini Daniel Zadik Pierpaolo Maisano Delser Jon H. Wetton Eduardo Arroyo-Pardo Gianpiero L. Cavalleri Peter de Knijff Giovanni Destro Bisol Berit Myhre Dupuy Heidi A. Eriksen Lynn B. Jorde Turi E. King Maarten H. Larmuseau Adolfo López de Munain Ana M. López-Parra Aphrodite Loutradis Jelena Milasin Andrea Novelletto Horolma Pamjav Antti Sajantila Werner Schempp Matt Sears Aslıhan Tolun Chris Tyler-Smith Anneleen Van Geystelen Scott Watkins Bruce Winney Mark A. Jobling

Many studies of human populations have used the male-specific region of the Y chromosome (MSY) as a marker, but MSY sequence variants have traditionally been subject to ascertainment bias. Also, dating of haplogroups has relied on Y-specific short tandem repeats (STRs), involving problems of mutation rate choice, and possible long-term mutation saturation. Next-generation sequencing can ascerta...

Journal: :Genome research 2014
Thomas Willems Melissa Gymrek Gareth Highnam David Mittelman Yaniv Erlich

Short tandem repeats are among the most polymorphic loci in the human genome. These loci play a role in the etiology of a range of genetic diseases and have been frequently utilized in forensics, population genetics, and genetic genealogy. Despite this plethora of applications, little is known about the variation of most STRs in the human population. Here, we report the largest-scale analysis o...

Journal: :Genetics and molecular research : GMR 2016
U R Pagel R S Reis V P Carvalho E V W Santos E Zandonade I D Louro F Paula

Short tandem repeats (STRs) are commonly used as genetic markers. The detection and analysis of STRs can be used to gather information on polymorphisms of interest to forensic geneticists. Denaturing polyacrylamide gel electrophoresis (PAGE) is an affordable method for the detection of minor sequence changes in DNA, while capillary electrophoresis (CE) is the gold standard for genotyping analys...

2016
Melissa Gymrek

Over the past several decades, the forensic and population genetic communities have increasingly leveraged short tandem repeats (STRs) for a variety of applications. The advent of next-generation sequencing technologies and STR-specific bioninformatic tools has enabled the profiling of hundreds of thousands of STRs across the genome. Nonetheless, these genotypes remain error-prone, hindering th...

2011
Habib Nasiri Mohammad-Reza Noori-Dalooi Jila Dastan Saeed-Reza Ghaffari

OBJECTIVE G-Banding followed by standard chromosome analysis is routinely used for prenatal detection of chromosomal abnormalities. In recent years, molecular cytogenetic techniques have been developed for rapid diagnosis of chromosomal abnormalities. Among these methods Quantitative Florescence Polymerase Chain Reaction (QF-PCR) has been widely used for this purpose. Heterozygosity of short ta...

Journal: :Trends in genetics : TIG 2014
Maximilian O Press Keisha D Carlson Christine Queitsch

Short tandem repeat (STR) variation has been proposed as a major explanatory factor in the heritability of complex traits in humans and model organisms. However, we still struggle to incorporate STR variation into genotype-phenotype maps. We review here the promise of STRs in contributing to complex trait heritability and highlight the challenges that STRs pose due to their repetitive nature. W...

Journal: :Blood cells, molecules & diseases 2015
Martin de Boer Shay Tzur Karin van Leeuwen Paula C D Dencher Karl Skorecki Baruch Wolach Ronit Gavrieli Ivane Nasidze Mark Stoneking Michael W T Tanck Dirk Roos

Chronic granulomatous disease (CGD) is a rare congenital immune deficiency caused by mutations in any of the five genes encoding NADPH oxidase subunits. One of these genes is NCF1, encoding the p47(phox) protein. A group of 39 patients, 14 of whom are of Kavkazi Jewish descent, was investigated for a founder effect for the mutation c.579G>A (p.Trp193Ter) in NCF1. We analyzed various genetic mar...

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