berthing force is a critical dynamic lateral force in the design of berthing structures, having equal relevance when compared to seismic forces. besides, the construction cost of berthing structures is very high which can be optimized by calculating precise design berthing energy on fender and selecting optimum fender system. in the present study, design berthing energy of bulk carriers having ...

Linear dynamic response of simply supported nanobeams subjected to a variable axial force is assessed by Galerkin numerical approach. Constitutive behavior is described by three functional forms of elastic energy densities enclosing nonlocal and strain gradient effects and their combination. Linear stationary dynamics of nanobeams is modulated by an axial force which controls the global stiffne...

We studied the elastic properties and mechanical stability of viral capsids under external force-loading with computer simulations. Our approach allows the implementation of specific geometries corresponding to specific phages, such as phi29 and cowpea chlorotic mottle virus. We demonstrate how, in a combined numerical and experimental approach, the elastic parameters can be determined with hig...

Single molecule force spectroscopy probes the strength, lifetime, and energetic details of intermolecular interactions in a simple experiment. A growing number of these studies have reported distinctly nonlinear trends in rupture force with loading rate that are typically explained in conventional models by invoking complex escape pathways. Recent analyses suggested that these trends should be ...

Combining Lipinski’s rule and docking method were used as a virtual screening tool to find out top hits from the large data base CHEMSPIDER with more than 1,4 million compounds. The lowest binding energy ΔEbind obtained in best mode was chosen scoring function for selecting ligands. Virtual has top-leads compounds less -11.0 kcal.mol-1 inhibition M2 protein channels of influenza A virus H5N1. S...

Lipid adhesion forces can be measured using several experimental techniques, but none of these techniques provide insight on the atomic level. Therefore, we performed extensive nonequilibrium molecular dynamics simulations of a phospholipid membrane in the liquid-crystalline phase out of which individual lipid molecules were pulled. In our method, as an idealization of the experimental setups, ...

In atomic force spectroscopic studies of the elastomeric protein ubiquitin, the β-strands 1-5 serve as the force clamp. Simulations show how the rupture force in the force-induced unfolding depends on the kinetics of water molecule insertion into positions where they can eventually form hydrogen bonding bridges with the backbone hydrogen bonds in the force-clamp region. The intrusion of water i...

We study the forced rupture of adhesive contacts between monomers that are not covalently linked in a Rouse chain. When the applied force (f) to the chain end is less than the critical force for rupture (f{c}), the reversible rupture process is coupled to the internal Rouse modes. If f/f{c}>1 the rupture is irreversible. In both limits, the nonexponential distribution of contact lifetimes, whic...