نتایج جستجو برای: pathway analysis

تعداد نتایج: 3083021  

پایان نامه :وزارت علوم، تحقیقات و فناوری - دانشگاه فردوسی مشهد - دانشکده ادبیات و علوم انسانی دکتر علی شریعتی 1391

this ethnographic case study research was carried out in a private school setting in the context of iran. the research tried to explore the analysis and identity construction of a group of learners and teachers along with the content analysis of books on the basis of four types of commodified, political, national and narrative identities. how english language learners and teachers in an informa...

2006
Matteo Pellegrini Shawn Cokus

During the past decade remarkable new techniques for transcriptional profiling have been developed. These include transcriptional profiling using hybridization microarrays as well as methods to sequence transcribed RNAs. No matter which technology is used, these experiments generate data on thousands of genes across multiple conditions and therefore the analysis of these data is often a dauntin...

2011
M. Vidal Sean A. Wiltshire Gabriel André Leiva-Torres Silvia M. Vidal

Coxsackievirus B3 (CVB3) infection is the most common cause of viral myocarditis. The pathogenesis of viral myocarditis is strongly controlled by host genetic factors. Although certain indispensable components of immunity have been identified, the genes and pathways underlying natural variation between individuals remain unclear. Previously, we isolated the viral myocarditis susceptibility 1 (V...

Journal: :The Biochemical journal 2011
Luis F de Figueiredo Toni I Gossmann Mathias Ziegler Stefan Schuster

NAD(+) is well known as a crucial cofactor in the redox balance of metabolism. Moreover, NAD(+) is degraded in ADP-ribosyl transfer reactions, which are important components of multitudinous signalling reactions. These include reactions linked to DNA repair and aging. In the present study, using the concept of EFMs (elementary flux modes), we established all of the potential routes in a network...

2017
Lu Liu Jinmao Wei Jianhua Ruan

Detecting associations between an input gene set and annotated gene sets (e.g., pathways) is an important problem in modern molecular biology. In this paper, we propose two algorithms, termed NetPEA and NetPEA', for conducting network-based pathway enrichment analysis. Our algorithms consider not only shared genes but also gene-gene interactions. Both algorithms utilize a protein-protein intera...

2013
Hakimeh Zali Mostafa Rezaei-Tavirani Reza Vafaee Majid Rezaei-Tavirani

Gastric cardia adenocarcinoma (GCA)is one of the few malignancies with unexplained reasons that have increased sharply in developed countries. The purpose of this review was to determine the pathways in GCA to identify new biomarker. So by comparing gene expression in GCA group with normal control identified important pathways. Gene expression data were extracted from the beforehand investigati...

Ali-Mohammad alizadeh, fakhri Badaghabadi, hamidreza Moheimani, maryah Rajaei, mohammadali Zeyghami, mohsen Nayebpour, mona pourabouk, saeed saleki, samaneh Naeimipour, sepideh Shariatnezhad, vahid khori,

Introduction: Intranodal pathways of atrioventricular (AV) node play a vital role in the delay of conduction time in response to various atrial inputs. The present study was aimed to determine the frequency-dependent electrophysiological properties of concealed slow pathway according to a functional model of isolated rabbit atrioventricular node preparation after fast pathway ablation. Meth...

2011
Julius S Ngwa Alisa K Manning Jonna L Grimsby Chen Lu Wei V Zhuang Anita L DeStefano

Genome-wide association studies often emphasize single-nucleotide polymorphisms with the smallest p-values with less attention given to single-nucleotide polymorphisms not ranked near the top. We suggest that gene pathways contain valuable information that can enable identification of additional associations. We used gene set information to identify disease-related pathways using three methods:...

2013
Yi-Hui Zhou William T. Barry Fred A. Wright

Resampling-based expression pathway analysis techniques have been shown to preserve type I error rates, in contrast to simple gene-list approaches that implicitly assume the independence of genes in ranked lists. However, resampling is intensive in computation time and memory requirements. We describe accurate analytic approximations to permutations of score statistics, including novel approach...

Journal: :Physiological genomics 2005
Jennifer Y King Rossella Ferrara Raymond Tabibiazar Joshua M Spin Mary M Chen Allan Kuchinsky Aditya Vailaya Robert Kincaid Anya Tsalenko David Xing-Fei Deng Andrew Connolly Peng Zhang Eugene Yang Clifton Watt Zohar Yakhini Amir Ben-Dor Annette Adler Laurakay Bruhn Philip Tsao Thomas Quertermous Euan A Ashley

Large-scale gene expression studies provide significant insight into genes differentially regulated in disease processes such as cancer. However, these investigations offer limited understanding of multisystem, multicellular diseases such as atherosclerosis. A systems biology approach that accounts for gene interactions, incorporates nontranscriptionally regulated genes, and integrates prior kn...

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