نتایج جستجو برای: est ssr markers

تعداد نتایج: 251106  

2017
Chunling Chen Meilong Xu Cuiping Wang Gaixia Qiao Wenwen Wang Zhaoyun Tan Tiantian Wu Zhengsheng Zhang

Lycium barbarum, commonly known as goji, is important in Chinese herbal medicine and its fruit is a very important agricultural and biological product. However, the molecular mechanism of formation of its fruit and associated medicinal and nutritional components is unexplored. Moreover, this species lacks SSR markers due to lack of genomic and transcriptomic information. In this study, a total ...

Journal: :Mathematical Biology and Bioinformatics 2022

EST-derived simple sequence repeat markers (EST-SSRs) are important tools for studies on genetic diversity, phylogeny, evolution, comparative genomics, QTL analysis, and gene-based associations. We have searched the literature known EST-SSRs used Scots pine (Pinus sylvestris L.) – one of world’s major forest species. Then, 91 102 suggested were manually aligned against reference genome Pinus ta...

2014
Sompong Chankaew Takehisa Isemura Sachiko Isobe Akito Kaga Norihiko Tomooka Prakit Somta Hideki Hirakawa Kenta Shirasawa Duncan A. Vaughan Peerasak Srinives

Vigna reflexo-pilosa, which includes a neglected crop, is the only one tetraploid species in genus Vigna. The ancestral species that make up this allotetraploid species have not conclusively been identified, although previous studies suggested that a donor genome of V. reflexo-pilosa is V. trinervia. In this study, 1,429 azuki bean EST-SSR markers were developed of which 38 EST-SSR primer pairs...

2014
Shamshad ul Haq Rohit Jain Meenakshi Sharma Sumita Kachhwaha S. L. Kothari

Expressed sequence tags (EST) are potential source for the development of genic microsatellite markers, gene discovery, comparative genomics, and other genomic studies. In the present study, 7630 ESTs were examined from NCBI for SSR identification and characterization. A total of 263 SSRs were identified with an average density of one SSR/4.2 kb (3.4% frequency). Analysis revealed that trinucle...

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