Xenbase (www.xenbase.org) is the model organism database for Xenopus tropicalis and Xenopus laevis, two frog species used as model systems for developmental and cell biology. Xenbase curation processes centre on associating papers with genes and extracting gene expression patterns. Papers from PubMed with the keyword 'Xenopus' are imported into Xenbase and split into two curation tracks. In the...

This paper presents the LSLink (or Life Science Link) methodology that provides users with a set of tools to explore the rich Web of interconnected and annotated objects in multiple repositories, and to identify meaningful associations. Consider a physical link between objects in two repositories, where each of the objects is annotated with controlled vocabulary (CV) terms from two ontologies. ...

Builders of medical informatics applications need controlled medical vocabularies to support their applications and it is to their advantage to use available standards. In order to do so, however, these standards need to address the requirements of their intended users. Over the past decade, medical informatics researchers have begun to articulate some of these requirements. This paper brings t...

AGRIS is a bibliographic database of scientific publications in the food and agricultural domain. The AGRIS web portal is highly visited, reaching peaks of 350,000 visits/month from more than 200 countries and territories. Considering the variety of AGRIS users, the possibility to support crosslanguage information retrieval is crucial to improve the usefulness of the website. This paper describ...

One of the most important tasks of a librarian is the assignment of appropriate subject(s) to a resource within a library’s collection. The subjects usually belong to a controlled vocabulary that is specifically designed for such a task. The most widely adopted controlled vocabulary across libraries around the world is the Library of Congress Subject Headings (LCSH). However, there seems to be ...

The issue of free-text versus controlled vocabulary is examined in this article. The history of the issue, which is seen as beginning with the debate over title term indexing in the last century, is reviewed and then attention is turned to questions which have not been satisfactorily addressed by previous research. The point is made that these questions need to be answered if we are to design r...

Controlled medical vocabularies are useful in application areas such as medical information-systems and decision-support. However, such vocabularies are large and complex, and working with them can be daunting. It is important to provide a means for orienting users to the vocabulary's contents. This paper introduces a methodology for partitioning a vocabulary into small, meaningful pieces. The ...