نتایج جستجو برای: dipeptide structures

تعداد نتایج: 457958  

Journal: :Protein engineering, design & selection : PEDS 2016
D Caballero A Virrueta C S O'Hern L Regan

We investigate the role of steric interactions in defining side-chain conformations in protein cores. Previously, we explored the strengths and limitations of hard-sphere dipeptide models in defining sterically allowed side-chain conformations and recapitulating key features of the side-chain dihedral angle distributions observed in high-resolution protein structures. Here, we show that modelin...

Journal: :The journal of physical chemistry. B 1998
A D MacKerell D Bashford M Bellott R L Dunbrack J D Evanseck M J Field S Fischer J Gao H Guo S Ha D Joseph-McCarthy L Kuchnir K Kuczera F T Lau C Mattos S Michnick T Ngo D T Nguyen B Prodhom W E Reiher B Roux M Schlenkrich J C Smith R Stote J Straub M Watanabe J Wiórkiewicz-Kuczera D Yin M Karplus

New protein parameters are reported for the all-atom empirical energy function in the CHARMM program. The parameter evaluation was based on a self-consistent approach designed to achieve a balance between the internal (bonding) and interaction (nonbonding) terms of the force field and among the solvent-solvent, solvent-solute, and solute-solute interactions. Optimization of the internal paramet...

Journal: : 2023

The interaction of the neurotrophin BDNF dipeptide mimetic, compound GSB-106, with tyrosine kinase TrkB receptor specific for fullsized was studied using surface plasmon resonance. significant decrease in binding to TrkB, which preincubated shown. obtained data indicate GSB-106 receptor.

Journal: :Journal of Functional Foods 2021

Sweet dipeptide Ala-Ala (AA) could be one of the most abundant dipeptides naturally generated in meat products due to high occurrence its sequence all along endogenous proteins, which means it play a key role dry-cured ham flavour development and bioactivity. In this study, mass spectrometry tandem methodology was optimised quantitate AA manufactured under different processing conditions. Dipep...

2014
Peter J. Stogios Elena Evdokimova Alexei Savchenko Patrice Courvalin Christopher T. Walsh

Vancomycin resistance in Gram-positive bacteria is due to production of cell-wall precursors ending in D-Ala-D-Lac or D-Ala-D-Ser, to which vancomycin exhibits low binding affinities, and to the elimination of the high-affinity precursors ending in D-Ala-D-Ala. Depletion of the susceptible high-affinity precursors is catalyzed by the zinc-dependent D,D-peptidases VanX and VanY acting on dipepti...

Journal: :The Journal of biological chemistry 1983
V Ganapathy F H Leibach

We examined the role of pH gradient and membrane potential in dipeptide transport in purified intestinal and renal brush-border membrane vesicles which were predominantly oriented right-side out. With an intravesicular pH of 7.5, changes in extravesicular pH significantly affected the transport of glycyl-L-proline and L-carnosine, and optimal dipeptide transport occurred at an extravesicular pH...

Journal: :The Journal of biological chemistry 1957
M J MYCEK J S FRUTON

In the experiments reported in the present communication, these studies have been extended with special reference to the specificity of the enzyme toward the dipeptide used as replacement agent. It had been suggested (1) that the value of pKz’ of a dipeptide is a determining factor in the efficiency with which it can participate in a transamidation reaction at ‘a given pH. This suggestion has b...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 1998
J Lin P J Toscano J T Welch

Dipeptidyl peptidase IV (EC 3.4.14.5; DPP IV), also known as the leukocyte differentiation antigen CD26 when found as an extracellular membrane-bound proline specific serine protease, cleaves a dipeptide from the N terminus of a polypeptide chain containing a proline residue in the penultimate position. Here we report that known (Z)-Ala-psi[CF=C]-Pro dipeptide isosteres 1 and 2, which contain O...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2014
Djalal Meziane-Cherif Peter J Stogios Elena Evdokimova Alexei Savchenko Patrice Courvalin

Vancomycin resistance in Gram-positive bacteria is due to production of cell-wall precursors ending in D-Ala-D-Lac or D-Ala-D-Ser, to which vancomycin exhibits low binding affinities, and to the elimination of the high-affinity precursors ending in D-Ala-D-Ala. Depletion of the susceptible high-affinity precursors is catalyzed by the zinc-dependent D,D-peptidases VanX and VanY acting on dipepti...

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