In [13] a homology theory –Morse-Conley-Floer homology– for isolated invariant sets of arbitrary flows on finite dimensional manifolds is developed. In this paper we investigate functoriality and duality of this homology theory. As a preliminary we investigate functoriality in Morse homology. Functoriality for Morse homology of closed manifolds is known [1, 2, 3, 8, 14], but the proofs use isom...