نتایج جستجو برای: active site cavity

تعداد نتایج: 828256  

Journal: :Molecular pharmacology 2015
Manish B Shah P Ross Wilderman Jingbao Liu Hyun-Hee Jang Qinghai Zhang C David Stout James R Halpert

X-ray crystal structures of complexes of cytochromes CYP2B6 and CYP2A6 with the monoterpene sabinene revealed two distinct binding modes in the active sites. In CYP2B6, sabinene positioned itself with the putative oxidation site located closer to the heme iron. In contrast, sabinene was found in an alternate conformation in the more compact CYP2A6, where the larger hydrophobic side chains resul...

Journal: :Metal-Based Drugs 1997
Fabrizio Briganti Andrea Scozzafava Claudiu T. Supuran

The interactions of Zn(II)- and Co(II)-substituted carbonic anhydrase (CA) isozymes I and II with amine type activators such as histamine, serotonin, phenetylamine dopamine and benzylhydrazine have been investigated kinetically, and spectroscopically. All of such activators are of the non-competitive type towards CO(2) hydration and 4-nitrophenylacetate hydrolysis for both human isozymes (HCA I...

Journal: :molecular biology research communications 2014
mohammad reza dayer mohammad saaid dayer

human immunodeficiency virus type 1 (hiv-1) protease inhibitors comprise an important class of drugs used in hiv treatments. however, mutations of protease genes accelerated by low fidelity of reverse transcriptase yield drug resistant mutants of reduced affinities for the inhibitors. this problem is considered to be a serious barrier against hiv treatment for the foreseeable future. in this st...

A. R. Salehi F. Naderi H. Hajizadeh H. Masoomi

In this paper, the structural properties of C20 and C12B8 fullerene interacting with glycine based onthree active sites of glycine and one C atom or one B atom in C12B8 were analyzed through thedensity functional theory. It was found out that the binding of glycine to C12B8 generated a complex.Our results were extremely relevant in order to identify the potential applications of functionalizedC...

Journal: :Journal of molecular biology 2002
Loredano Pollegioni Kay Diederichs Gianluca Molla Stephan Umhau Wolfram Welte Sandro Ghisla Mirella S Pilone

The 3D structure of the flavoprotein D-amino acid oxidase (DAAO) from the yeast Rhodotorula gracilis (RgDAAO) in complex with the competitive inhibitor anthranilate was solved (resolution 1.9A) and structural features relevant for the overall conformation and for catalytic activity are described. The FAD is bound in an elongated conformation in the core of the enzyme. Two anthranilate molecules...

Journal: :Protein science : a publication of the Protein Society 2001
U H Kahlow R D Schmid J Pleiss

Transesterification of (+/-)-menthol using propionic acid anhydride and Candida rugosa lipase was performed in chloroform and water at different pressures (1, 10, 50, and 100 bar) to study the pressure dependence of enantioselectivity E. As a result, E significantly decreased with increasing pressure from E = 55 (1 bar) to E = 47 (10 bar), E = 37 (50 bar), and E = 9 (100 bar). To rationalize th...

Journal: :research in pharmaceutical sciences 0
ayyub mojaddami 1department of medicinal chemistry and pharmaceutical sciences research centre, school of pharmacy, shiraz university of medical sciences, shiraz, i.r. iran. amirhossein sakhteman 1department of medicinal chemistry and pharmaceutical sciences research centre, school of pharmacy, shiraz university of medical sciences, shiraz, i.r. iran. masood fereidoonnezhad 2department of medicinal chemistry, school of pharmacy, ahvaz jundishapur university of medical sciences, ahvaz, i.r. iran. zeinab faghih 1department of medicinal chemistry and pharmaceutical sciences research centre, school of pharmacy, shiraz university of medical sciences, shiraz, i.r. iran. atena najdian 3department of nuclear pharmacy, school of pharmacy, tehran university of medical sciences, tehran, i.r. iran. soghra khabnadideh 1department of medicinal chemistry and pharmaceutical sciences research centre, school of pharmacy, shiraz university of medical sciences, shiraz, i.r. iran.

aromatase inhibitors (ais) as effective candidates have been used in the treatment of hormone-dependent breast cancer. in this study, we have proposed 300 structures as potential ais and filtered them by lipinski’s rule of five using druglito software. subsequently, they were subjected to docking simulation studies to select the top 20 compounds based on their gibbs free energy changes and also...

Journal: :Molecular pharmacology 2008
Andrew Holt David J Smith Laura Cendron Giuseppe Zanotti Adelio Rigo Maria Luisa Di Paolo

Human semicarbazide-sensitive amine oxidase (SSAO) is a target for novel anti-inflammatory drugs that inhibit enzymatic activity. However, progress in developing such drugs has been hampered by an incomplete understanding of mechanisms involved in substrate turnover. We report here results of a comparative study of human and bovine SSAO enzymes that reveal binding of substrates and other ligand...

Journal: :Journal of bacteriology 2011
Felix Tenbrink Bernhard Schink Peter M H Kroneck

The soluble tungsten, iron-sulfur enzyme acetylene hydratase (AH) from mesophilic Pelobacter acetylenicus is a member of the dimethyl sulfoxide (DMSO) reductase family. It stands out from its class as it catalyzes a nonredox reaction, the addition of H₂O to acetylene (H-C≡C-H) to form acetaldehyde (CH₃CHO). Caught in its active W(IV) state, the high-resolution three-dimensional structure of AH ...

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