نتایج جستجو برای: transcriptomics

تعداد نتایج: 4822  

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2014
Takashi Morihara Noriyuki Hayashi Mikiko Yokokoji Hiroyasu Akatsu Michael A Silverman Nobuyuki Kimura Masahiro Sato Yuhki Saito Toshiharu Suzuki Kanta Yanagida Takashi S Kodama Toshihisa Tanaka Masayasu Okochi Shinji Tagami Hiroaki Kazui Takashi Kudo Ryota Hashimoto Naohiro Itoh Kouhei Nishitomi Yumi Yamaguchi-Kabata Tatsuhiko Tsunoda Hironori Takamura Taiichi Katayama Ryo Kimura Kouzin Kamino Yoshio Hashizume Masatoshi Takeda

Alzheimer's disease (AD) is characterized by the accumulation of amyloid-β (Aβ). The genes that govern this process, however, have remained elusive. To this end, we combined distinct mouse strains with transcriptomics to directly identify disease-relevant genes. We show that AD model mice (APP-Tg) with DBA/2 genetic backgrounds have significantly lower levels of Aβ accumulation compared with SJ...

2017
Omid Safronov Jürgen Kreuzwieser Georg Haberer Mohamed S Alyousif Waltraud Schulze Naif Al-Harbi Leila Arab Peter Ache Thomas Stempfl Joerg Kruse Klaus X Mayer Rainer Hedrich Heinz Rennenberg Jarkko Salojärvi Jaakko Kangasjärvi

Plants adapt to the environment by either long-term genome evolution or by acclimatization processes where the cellular processes and metabolism of the plant are adjusted within the existing potential in the genome. Here we studied the adaptation strategies in date palm, Phoenix dactylifera, under mild heat, drought and combined heat and drought by transcriptomic and metabolomic profiling. In t...

Journal: :Bioinformatics 2013
Brian J. Schmidt Ali Ebrahim Thomas O. Metz Joshua N. Adkins Bernhard O. Palsson Daniel R. Hyduke

MOTIVATION Genome-scale metabolic models have been used extensively to investigate alterations in cellular metabolism. The accuracy of these models to represent cellular metabolism in specific conditions has been improved by constraining the model with omics data sources. However, few practical methods for integrating metabolomics data with other omics data sources into genome-scale models of m...

Journal: :Journal of Investigative Dermatology 2023

Atopic dermatitis (AD) is the most common chronic inflammatory skin disease. We aimed to investigate complex spatial and neighboring characteristics of AD skin. performed Visium transcriptomics sequencing in biopsies from 6 healthy control (HC) donors 7 patients (lesion non lesion). For single-cell analysis, we analyzed previously published data suction blister material full-thickness (4 ADs 5 ...

2015
Maria Cardona Juan Antonio López Anna Serafín Anthony Rongvaux Javier Inserte David García-Dorado Richard Flavell Marta Llovera Xavier Cañas Jesús Vázquez Daniel Sanchis Guo-Chang Fan

Executioner caspase-3 and -7 are proteases promoting cell death but non-apoptotic roles are being discovered. The heart expresses caspases only during development, suggesting they contribute to the organ maturation process. Therefore, we aimed at identifying novel functions of caspases in heart development. We induced simultaneous deletion of executioner caspase-3 and -7 in the mouse myocardium...

2016
Edith Francoz Philippe Ranocha Clémentine Pernot Aurélie Le Ru Valérie Pacquit Christophe Dunand Vincent Burlat

The rationale of this study is to compare and integrate two heterologous datasets intended to unravel the spatiotemporal specificities of gene expression in a rapidly growing and complex organ. We implemented medium-throughput RNA in situ hybridization (ISH) for 39 genes mainly corresponding to cell wall proteins for which we have particular interest, selected (i) on their sequence identity (24...

Completion of the human genome project revealed that the molecular mechanisms of cellular responses to different situations cannot be predicted from the sequence of their genes. Hence, most biological researches are focused on the roles of proteins which are much more challenging tasks. Omics technologies, instead of analyzing individual components of an organism by conventional biochemical met...

Journal: :Molecular cell 2015
Jan Philipp Junker Alexander van Oudenaarden

Two publications in the current issue of Cell introduce novel methods for high-throughput single-cell transcriptomics by using droplet microfluidics and sophisticated barcoding schemes for transcriptional profiling of thousands of individual cells.

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