In the crystal structure of the title salt, C7H7Cl2N2O2+.Cl-, the chloride anions participate in extensive hydrogen bonding with the aminium cations and indirectly link the molecules through multiple N+-H...Cl- salt bridges. There are two independent molecules in the asymmetric unit, related by a pseudo-inversion center. The direct intermolecular coupling is established by C-H...O, C-H...Cl and...

Interactions between actin, an anionic polyelectrolyte, and lysozyme, a cationic globular protein, have been examined using a combination of synchrotron small-angle x-ray scattering and molecular dynamics simulations. Lysozyme initially bridges pairs of actin filaments, which relax into hexagonally coordinated columnar complexes comprised of actin held together by incommensurate one-dimensional...

Experimental evidence suggests that the folding and aggregation of the amyloid -protein (A ) into oligomers is a key pathogenetic event in Alzheimer’s disease. Inhibiting the pathologic folding and oligomerization of A could be effective in the prevention and treatment of Alzheimer’s disease. Here, using all-atom molecular dynamics simulations in explicit solvent, we probe the initial stages of...

NKG2D recognizes multiple diverse ligands. Despite recent efforts in determining the crystal structures of NKG2D-ligand complexes, the principle governing this receptor-ligand recognition and hence the criteria for identifying unknown ligands of NKG2D remain central issues to be resolved. Here we compared the molecular recognition between NKG2D and three of the known ligands, UL16 binding prote...

Influenza A hemagglutinin (HA) is a homotrimeric glycoprotein composed of a fibrous globular stem supporting a globular head containing three sialic acid binding sites responsible for infection. The H7N9 strain has consistently infected an avian host, however, the novel 2013 strain is now capable of infecting a human host which would imply that the HA in both strains structurally differ. A bett...

The structure of a single alanine-based Ace-AEAAAKEAAAKA-Nme peptide in explicit aqueous electrolyte solutions (NaCl, KCl, NaI, and KF) at large salt concentrations (3-4 M) is investigated using ≃ 1 μs molecular dynamics (MD) computer simulations. The peptide displays 71% α-helical structure without salt and destabilizes with the addition of NaCl in agreement with experiments of a somewhat long...