conclusions accordingly, it can be concluded that locally low temperatures and acidic conditions are the main suspected reasons for protein misfolding. results based on the study findings the low temperature, 0°c, and acidic condition change the structure more strongly than other mentioned conditions. the low temperature and acidic conditions seem to have the most misfolding effect on insulin s...

In molecular biology, sequence alignment is a fundamental but powerful technique. Biologists find the similarity, the difference and even the function of the input sequences (DNA, RNA and protein sequences) by it. With various purposes, there are many algorithms to align two sequences based on different criteria. Though there are various ways to align macromolecular sequences, a sequence alignm...

The protein structure prediction problem is one of the most studied problems in Computational Biology. It can be reasonably abstracted as a minimization problem. The function to be minimized depends on the distances between the various amino-acids composing the protein and on their types. Even with strong approximations, the problem is shown to be computationally intractable. However, the solut...

To study protein clustering is very important in diverse fields such as drug design and environmental industry. For a meaningful clustering, protein structure must be considered. But, protein structures are very complicated and have so much information such as angles, 3-dimensional coordinates. Thus, it is not easy to efficiently compute their relations. In this paper, we present a method to ef...

In the near future, design of a new generation of drugs targeting proteins will be required. Considering the complex bond between the drug and protein, the structure and stability of the target protein should be considered. So far, a series of in vitro investigations have been conducted with the aim of predicting drug-biological medium interactions. In these studies, use of spectroscopic method...

The presence of highly regular secondary structure motifs in protein structure is a fascinating area of study. The secondary structures play important roles in protein structure and protein folding. We investigate the folding properties of protein by introducing the effect of secondary structure elements. We observed the emergence of several structures with both large average energy gap and hig...

in the near future, design of a new generation of drugs targeting proteins will be required. considering the complex bond between the drug and protein, the structure and stability of the target protein should be considered. so far, a series of in vitro investigations have been conducted with the aim of predicting drug-biological medium interactions. in these studies, use of spectroscopic method...

Protein aggregation is phenomenon wherein protein loses its native structure and aggregates due to the adaption of non-native conformation. Amyloid aggregation formed by the accumulation of various proteins causes many diseases in humans and other organisms. Antioxidants can prevent proteins aggregation. Pulicaria undulata  extract along with phenolic compounds can increase protein stability an...