نتایج جستجو برای: dna cleavage analysis

تعداد نتایج: 3245516  

Journal: :Science 2004
Nasim A Begum Kazuo Kinoshita Naoki Kakazu Masamichi Muramatsu Hitoshi Nagaoka Reiko Shinkura Detlev Biniszkiewicz Laurie A Boyer Rudolf Jaenisch Tasuku Honjo

Activation-induced cytidine deaminase (AID) is required for the DNA cleavage step in immunoglobulin class switch recombination (CSR). AID is proposed to deaminate cytosine to generate uracil (U) in either mRNA or DNA. In the second instance, DNA cleavage depends on uracil DNA glycosylase (UNG) for removal of U. Using phosphorylated histone gamma-H2AX focus formation as a marker of DNA cleavage,...

Journal: :Nucleic acids research 1976
S Forsblom R Rigler M Ehrenberg L Philipson

The kinetics of cleavage of DNA from Adenovirus Type 1 (Ad1), Type 5 (Ad5) and Type 6 (Ad6) by restriction endonuclease EcoRI was investigated by quantitative evaluation of the fluorescence from ethidium stained DNA fragments separated on agarose gels. The apparent rate constants of cleavage at different cleavage sites have been determined and large differences in the cleavage rates of the indi...

2008
Carmen M. Moure Frederick S. Gimble Florante A. Quiocho

I-SceI is a homing endonuclease that specifically cleaves an 18-bp double-stranded DNA. I-SceI exhibits a strong preference for cleaving the bottom strand DNA. The published structure of I-SceI bound to an uncleaved DNA substrate provided a mechanism for bottom strand cleavage but not for top strand cleavage. To more fully elucidate the I-SceI catalytic mechanism, we determined the X-ray struct...

Journal: :Cell 1996
Harri Savilahti Kiyoshi Mizuuchi

Central to the Mu transpositional recombination are the two chemical steps; donor DNA cleavage and strand transfer. These reactions occur within the Mu transpososome that contains two Mu DNA end segments bound to a tetramer of MuA, the transposase. To investigate which MuA monomer catalyzes which chemical reaction, we made transpososomes containing wild-type and active site mutant MuA. By pre-l...

Journal: :Molecular pharmacology 2003
Hanlin Gao Edith F Yamasaki Kenneth K Chan Linus L Shen Robert M Snapka

The two known antineoplastic quinoxaline topoisomerase II poisons, XK469 (NSC 697887) and CQS (chloroquinoxaline sulfonamide, NSC 339004), were compared for DNA cleavage site specificity, using purified human topoisomerase IIalpha and human topoisomerase IIbeta. The DNA cleavage intensity pattern for topoisomerase IIalpha poisoning by CQS closely resembled that of VM-26, despite the lack of any...

2017
Yavuz S Dagdas Janice S Chen Samuel H Sternberg Jennifer A Doudna Ahmet Yildiz

The Cas9 endonuclease is widely used for genome engineering applications by programming its single-guide RNA, and ongoing work is aimed at improving the accuracy and efficiency of DNA targeting. DNA cleavage of Cas9 is controlled by the conformational state of the HNH nuclease domain, but the mechanism that governs HNH activation at on-target DNA while reducing cleavage activity at off-target s...

Journal: :international journal of political science 0

some of the most important characters in convenience are economic, social equity and optimal distribution of facilities of development among people in societies. planners are, in different societies in direction for decreasing inequity and poverty, designing many plans. fundamental steps in design' planning for capturing these goals is paying more attention to plans with an approach to rea...

Journal: :Journal of the American Chemical Society 2013
Darren J Parker Ying Xiao John M Aguilar Scott K Silverman

We recently used in vitro selection to identify many deoxyribozymes that catalyze DNA phosphodiester bond hydrolysis and create 5'-phosphate and 3'-hydroxyl termini. Alternatively, numerous deoxyribozymes have been identified for catalysis of RNA cleavage by 2'-hydroxyl transesterification, forming 2',3'-cyclic phosphate and 5'-hydroxyl termini. In this study, we investigated the ability of DNA...

2015
Pan F. Chan Velupillai Srikannathasan Jianzhong Huang Haifeng Cui Andrew P. Fosberry Minghua Gu Michael M. Hann Martin Hibbs Paul Homes Karen Ingraham Jason Pizzollo Carol Shen Anthony J. Shillings Claus E. Spitzfaden Robert Tanner Andrew J. Theobald Robert A. Stavenger Benjamin D. Bax Michael N. Gwynn

New antibacterials are needed to tackle antibiotic-resistant bacteria. Type IIA topoisomerases (topo2As), the targets of fluoroquinolones, regulate DNA topology by creating transient double-strand DNA breaks. Here we report the first co-crystal structures of the antibacterial QPT-1 and the anticancer drug etoposide with Staphylococcus aureus DNA gyrase, showing binding at the same sites in the ...

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