Genome-wide association (GWA) studies to map genes for complex traits are powerful yet costly. DNA-pooling strategies have the potential to dramatically reduce the cost of GWA studies. Pooling using Affymetrix arrays has been proposed and used but the efficiency of these arrays has not been quantified. We compared and contrasted Affymetrix Genechip HindIII and Illumina HumanHap300 arrays on the...

Study cost remains the major limiting factor for genome-wide association studies due to the necessity of genotyping a large number of SNPs for a large number of subjects. Both DNA pooling strategies and two-stage designs have been proposed to reduce genotyping costs. In this study, we propose a cost-effective, two-stage approach with a DNA pooling strategy. During stage I, all markers are evalu...

In the era of (pre) elimination setting, the prevalence of malaria has been decreasing in most of the previously endemic areas. Therefore, effective cost- and time-saving validated pooling strategy is needed for detection of malaria in low transmission settings. In this study, optimal pooling numbers and lowest detection limit were assessed using known density samples prepared systematically, f...

The standard pooling problem is a NP-hard subclass of non-convex quadraticallyconstrained optimization problems that commonly arises in process systems engineering applications. We take a parametric approach to uncovering topological structure and sparsity, focusing on the single quality standard pooling problem in its p-formulation. The structure uncovered in this approach validates Professor ...

An algorithm is described for measuring the subjective, visual impact of 1-D defects (streaks and bands) in prints. A general approach to measurements of spatially localized image defects is described, attempting to directly match three stages of processing by the human observer: formation of the perceived image, identification of individual defects, and pooling of the visual defect magnitudes ...