The Eriksen flanker task (Eriksen and Eriksen, Perception & Psychophysics, 16, 143-149, 1974) is a classic test in cognitive psychology of visual selective attention. Two recent computational models have formalised the dynamics of the apparent increasing attentional selectivity during stimulus processing, but with very different theoretical underpinnings: The shrinking spotlight (SSP) model (Wh...

A mathematical model was developed to describe batch and continuous fermentation of glucose to organic acids with Clostridium tyrobutyricum. A modified Monod equation was used to describe cell growth, and a Luedeking-Piret equation was used to describe the production of butyric and acetic acids. Using the batch fermentation equations, models predicting butyric acid selectivity for continuous fe...

The contribution of interocular orientation differences to depth perception, at either the neuronal or the psychophysical level, is unclear. To understand the responses of binocular neurons to orientation disparity, we extended the energy model of Ohzawa et al. (1990) to incorporate binocular differences in receptive-field orientation. The responses of the model to grating stimuli with interocu...

We present a modeling approach to determine the permeability-selectivity tradeoff for microfiltration and ultrafiltration membranes with a distribution of pore sizes and pore shapes. Using the formulated permeability-selectivity model, the effect of pore aspect ratio and pore size distribution on the permeability-selectivity tradeoff of the membrane is analyzed. A finite element model is develo...

The ability of biological ion channels to conduct selected ions across cell membranes is critical for the survival of both animal and bacterial cells. Numerous investigations of ion selectivity have been conducted over more than 50 years, yet the mechanisms whereby the channels select certain ions and reject others are not well understood. Here we report a new application of Jarzynski's Equalit...

Structure-function studies have shown that it is possible to convert a sodium channel to a calcium-selective channel by a single amino acid substitution in the selectivity filter locus. Ion permeation through the "model selectivity filter" was modeled with a reduced set of functional groups representative of the constituent amino acid side chains. Force-field minimizations were conducted to obt...

Previously, we reported the discovery of a series of N-hydroxycinnamamide-based HDAC inhibitors, among which compound 11y exhibited high HDAC1/3 selectivity. In this current study, structural derivatization of 11y led to a new series of benzamide based HDAC inhibitors. Most of the compounds exhibited high HDACs inhibitory potency. Compound 11a (with 4-methoxybenzoyl as N-substituent in the cap ...

This chapter describes a comprehensive computational study on the template-assisted and Pd(OAc)2-catalyzed meta-selective C–H olefination reaction. The reaction mechanism, the active form of catalyst, the potential role of silver salt and the origin of meta-selectivity were investigated in this work. The computational results demonstrated that the conventionally proposed monomeric Pd(OAc)2 mode...