Maximum likelihood is a potentially powerful approach for investigating the tempo of diversification using molecular phylogenetic data. Likelihood methods distinguish between rate-constant and rate-variable models of diversification by fitting birth-death models to phylogenetic data. Because model selection in this context is a test of the null hypothesis that diversification rates have been co...

This paper considers an empirical likelihood method to estimate the parameters of the quantile regression (QR) models and to construct confidence regions that are accurate in finite samples. To achieve the higher-order refinements, we smooth the estimating equations for the empirical likelihood. We show that the smoothed empirical likelihood (SEL) estimator is first-order asymptotically equival...

Abstract We propose a multiple-step procedure to compute average partial effects (APEs) for fixed-effects static and dynamic logit models estimated by (pseudo) conditional maximum likelihood. As individual are eliminated conditioning on suitable sufficient statistics, we evaluating the APEs at likelihood estimates unobserved heterogeneity, along with fixed- T consistent estimator of slope param...

In regression models for duration data it is usually implicitly assumed that all variables are measured and operationalized exactly If measurement error is present however but not taken into account parameter estimates may be severely biased The present paper studies measurement error corrected estimation in the context of a huge class of parametric duration models The proposed quasi likelihood...

I analyze a Gaussian linear instrumental variables model with a single endogenous regressor in which the number of instruments is large. I use an invariance property of the model and a Bernstein-von Mises type argument to construct an integrated likelihood which by design yields inference procedures that are valid under many instrument asymptotics and are asymptotically optimal under rotation i...

Two spurious nodes were found in phylogenetic analyses of vertebrate rhodopsin sequences in comparison with well-established vertebrate relationships. These spurious reconstructions were well supported in bootstrap analyses and occurred independently of the method of phylogenetic analysis used (parsimony, distance, or likelihood). Use of this data set of vertebrate rhodopsin sequences allowed u...

In diseases caused by a deleterious gene mutation, knowledge of age-specific cumulative risks is necessary for medical management of mutation carriers. When pedigrees are ascertained through at least one affected individual, ascertainment bias can be corrected by using a parametric method such as the Proband's phenotype Exclusion Likelihood, or PEL, that uses a survival analysis approach based ...