A Novel Genetic classification of SARS coronavirus-2 following whole nucleic acid and protein alignment of the isolated viruses

Authors

  • Alireza Sanchooli Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
  • Jose Thekkiniath Fuller Laboratories, 1312 East Valencia Drive, Fullerton, CA- 92831, USA
  • Mahboubeh Kamali Department of Biology, Islamic Azad University, North Tehran Branch, Tehran, Iran
  • Mahdi Cheraghi Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
  • Mohammad Kazem Shahkarami Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
  • Mohammad Shojaei Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
  • Shahla Karimi Naghlani Razi Vaccine and Serum Research Institute, Agricultura l Research, Education and Extension Organization (AREEO), Karaj, Iran
Abstract:

Background and aims: The end of 2019 has marked the year, which the human population encountered a novel virus; SARS-CoV-2 that causes a disease namely COVID-19. Here we focused on the genome and protein mutations and subsequently suggested a new classification of the SARS-CoV-2. Materials and Methods: Our study showed that some extra positions in the virus genome play a key role in the SARS-CoV-2 classification. Based on the analysis of the whole genome sequences of 93 viruses. Results: mutations were classified into nine divisions including IA-1, IA-2, IA-3, IB, II, L1, L2, L3 and S. Totally, 279 mutations were found in the SARS-CoV-2 genomes. 24 mutations lead to the amino acid frame shifting, of which 15 mutations lead to positive frame shifting in amino acids sequences. Conclusion: Sequence alignment of these positions with that of ancestors showed no change suggesting that they might have occurred in the SARS-CoV-2 genomes to adapt itself to humans.

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Journal title

volume 15  issue None

pages  7- 14

publication date 2021-06

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