The charge-transfer states in a stacked nucleobase dimer complex: A benchmark study
نویسندگان
چکیده
Electronic singlet excitations of stacked adenine-thymine (AT) and guanine-cytosine (GC) complexes have been investigated with respect to local excitation and charge-transfer (CT) characters. Potential energy curves for rigid displacement of the nucleobases have been computed to establish the distance dependence of the CT states. The second-order algebraic diagrammatic construction [ADC(2)] method served as reference approach for comparison to a selected set of density functionals used within the time-dependent density functional theory (TD-DFT). Particular attention was dedicated to the performance of the recently developed family of M06 functionals. The calculations for the stacked complexes show that at the ADC(2) level, the lowest CT state is S(6) for the AT and as S(4) for the GC pair. At the reference geometry, the actual charge transferred is found to be 0.73 e for AT. In case of GC, this amount is much smaller (0.17 e). With increasing separation of the two nucleobases, the CT state is strongly destabilized. The M06-2X version provides a relatively good reproduction of the ADC(2) results. It avoids the serious overstabilization and overcrowding of the spectrum found with the B3LYP functional. On the other hand, M06-HF destabilizes the CT state too strongly. TD-DFT/M06-2X calculations in solution (heptane, isoquinoline, and water) using the polarizable continuum model show a stabilization of the CT state and an increase in CT character with increasing polarity of the solvent.
منابع مشابه
The effect of p-stacking and H-bonding on ionization energies of a nucleobase: uracil dimer cationw
The electronic structure of the ionized p-stacked and H-bonded uracil dimers as well as that of the monomer, is characterized by the equation-of-motion coupled-cluster method for ionization potentials (EOM-IP). Vertical ionization energies (IEs) for the 5 lowest states of the monomer and the 10 lowest states of the dimers are presented. Non-covalent interactions in the dimers reduce the lowest ...
متن کاملAdsorption of nucleobase pairs on hexagonal boron nitride sheet: hydrogen bonding versus stacking.
The adsorption of hydrogen-bonded and stacked nucleobase pairs on the hexagonal boron nitride (h-BN) surface was studied by density functional theory and molecular dynamics methods. Eight types of nucleobase pairs (i.e., GG, AA, TT, CC, UU, AT, GC, and AU) were chosen as the adsorbates. The adsorption configurations, interaction energies, and electronic properties of the nucleobase pair on the ...
متن کاملExciton delocalization, charge transfer, and electronic coupling for singlet excitation energy transfer between stacked nucleobases in DNA: an MS-CASPT2 study.
Exciton delocalization and singlet excitation energy transfer have been systematically studied for the complete set of 16 DNA nucleobase dimers in their ideal, single-strand stacked B-DNA conformation, at the MS-CASPT2 level of theory. The extent of exciton delocalization in the two lowest (π,π(*)) states of the dimers is determined using the symmetrized one-electron transition density matrices...
متن کاملNucleic acid reactivity: Challenges for next-generation semiempirical quantum models
Semiempirical quantum models are routinely used to study mechanisms of RNA catalysis and phosphoryl transfer reactions using combined quantum mechanical (QM)/molecular mechanical methods. Herein, we provide a broad assessment of the performance of existing semiempirical quantum models to describe nucleic acid structure and reactivity to quantify their limitations and guide the development of ne...
متن کاملSpectroscopic Studies on Charge-Transfer Complexation of Iodine with Dibenzo-15-crown-5 and Benzo-12-crown-4 in Chloroform, Dichloromethane and 1,2-Dichloroethane
The formation of charge-transfer complexation between dibenzo-15-crown-5 (DB15C5) and benzo-12-crown-4 (B12C4) (Donor) and iodine is investigated spectrophotometrically in three chlorinated solvents,chloroform, dichloromethane (DCM) and 1,2-dichloroethane (DCE) solution at 25°C. The change in polarityof the solvent also doesn’t affect the stoichiometry of the complexes. Values of formation cons...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Journal of computational chemistry
دوره 32 7 شماره
صفحات -
تاریخ انتشار 2011