SnapShot: TCGA-Analyzed Tumors

Meeting Summary TCGA

tRFs across 32 TCGA cancers

TCGA-Assembler 2: Software Pipeline for Retrieval and Processing of TCGA/CPTAC Data.

Motivation The Cancer Genome Atlas (TCGA) program has produced huge amounts of cancer genomics data providing unprecedented opportunities for research. In 2014, we developed TCGA-Assembler (Zhu et al., 2014), a software pipeline for retrieval and processing of public TCGA data. In 2016, TCGA data were transferred from the TCGA data portal to the Genomic Data Commons (GDC), which is supported by...

TCGA Expedition: A Data Acquisition and Management System for TCGA Data

BACKGROUND The Cancer Genome Atlas Project (TCGA) is a National Cancer Institute effort to profile at least 500 cases of 20 different tumor types using genomic platforms and to make these data, both raw and processed, available to all researchers. TCGA data are currently over 1.2 Petabyte in size and include whole genome sequence (WGS), whole exome sequence, methylation, RNA expression, proteom...

TCGA - Assembler : Pipeline for TCGA Data Downloading , Assembling , and Processing ( Supplementary Methods )

The Cancer Genome Atlas (TCGA) is supported by the National Cancer Institute and the National Human Genome Research Institute to chart the molecular landscape of tumor samples for more than 20 types of cancer [1-3]. TCGA has been generating multi-modal genomics, epigenomics, and proteomics data for thousands of cancer patients, providing unprecedented opportunities for researchers to systematic...