Identification of functional modules based on transcriptional regulation structure

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Identification of functional modules based on transcriptional regulation structure

BACKGROUND Identifying gene functional modules is an important step towards elucidating gene functions at a global scale. Clustering algorithms mostly rely on co-expression of genes, that is group together genes having similar expression profiles. RESULTS We propose to cluster genes by co-regulation rather than by co-expression. We therefore present an inference algorithm for detecting co-reg...

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15 صفحه اول

Transcriptional Regulation by Competing Transcription Factor Modules

Gene regulatory networks lie at the heart of cellular computation. In these networks, intracellular and extracellular signals are integrated by transcription factors, which control the expression of transcription units by binding to cis-regulatory regions on the DNA. The designs of both eukaryotic and prokaryotic cis-regulatory regions are usually highly complex. They frequently consist of both...

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ژورنال

عنوان ژورنال: BMC Proceedings

سال: 2008

ISSN: 1753-6561

DOI: 10.1186/1753-6561-2-s4-s4